Locus 9806

Sequence ID 3R_DroMel_CAF1
Location 26,062,717 – 26,062,811
Length 94
Max. P 0.961250
window15661

overview

Window 1

Location 26,062,717 – 26,062,811
Length 94
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 78.14
Mean single sequence MFE -26.72
Consensus MFE -12.02
Energy contribution -13.62
Covariance contribution 1.60
Combinations/Pair 1.20
Mean z-score -2.44
Structure conservation index 0.45
SVM decision value 1.52
SVM RNA-class probability 0.961250
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26062717 94 + 27905053
ACGUGCGCGAUUAUUGCUGUAUAAGGA-----------AAAAUUC--AGUGAUGAUGAUUAUUAUCGCGAGACAGUUUUCCCAUUAAGCAGCGAUUAUGGCGAUGGC
.(((.(((.((.((((((((.((((((-----------(((..((--.((((((((....))))))))..))...))))))..))).)))))))).)).)))))).. ( -33.00)
>DroSec_CAF1 55206 93 + 1
ACGUGCGCAAUUAUUGCUGUAUAAGGA-----------AAAA-UC--GGCGAUGUUGAUUAUUAUCGCGAGACAGUUUUCCCAUUAAGCAGCGAUUAUGGCGAUGGC
.(((.(((....((((((((.((((((-----------(((.-((--.((((((........))))))..))...))))))..))).))))))))....)))))).. ( -31.70)
>DroSim_CAF1 56343 93 + 1
ACGUGCGCAAUUAUUGCUGUAUAAGGA-----------AAAA-UC--GGCGAUGAUGAUUAUUAUCGCGAGACAGUUUUCCCAUUAAGCAGCGAUUAUGGCGAUGGC
.(((.(((....((((((((.((((((-----------(((.-((--.((((((((....))))))))..))...))))))..))).))))))))....)))))).. ( -33.20)
>DroEre_CAF1 59640 82 + 1
ACGUGCGUGAUUAUUGCUUUAUAAGAA-----------AAAAAACAG-----UGAUGAUUAUUAUCGCUAGACAGUUUUCCCAUUACGAGGCGAUUAU---------
............(((((((..((((((-----------((.....((-----((((((...))))))))......)))))...)))..)))))))...--------- ( -15.80)
>DroYak_CAF1 57348 98 + 1
ACGUGCGUGAUUAUUGCUGUAUAGGAAAACGGGGAAAAAAAAAACAAAGUGCUGAUGAUUAUUAUCGCCAGACAGUUUUCCCAUUACGUGGCGUUUAU---------
(((((((((((..((.((....)).))....(((((((...........(((((.((((....)))).))).)).)))))))))))))).))))....--------- ( -19.90)
>consensus
ACGUGCGCGAUUAUUGCUGUAUAAGGA___________AAAA_UC__AGCGAUGAUGAUUAUUAUCGCGAGACAGUUUUCCCAUUAAGCAGCGAUUAUGGCGAUGGC
.....(((.((.(((((((..(((........................((((((((....))))))))..((......))...)))..))))))).)).)))..... (-12.02 = -13.62 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:36 2006