| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,047,156 – 26,047,258 |
| Length | 102 |
| Max. P | 0.884345 |
| Location | 26,047,156 – 26,047,258 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.64 |
| Mean single sequence MFE | -24.65 |
| Consensus MFE | -11.12 |
| Energy contribution | -11.48 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26047156 102 + 27905053 C--CAG---CUCUC----CAACGGCUGUCAGCUUCCCCAAUAAUUUGUUUAAUGGCAGCGUAAA-AAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAGGU----- .--...---....(----(....(((((((.......(((....))).....))))))).((((-(((((((((...((((.....)))).))))))))))))).....)).----- ( -23.30) >DroVir_CAF1 60971 106 + 1 C-------CCACUCCAACUUAUUGAUGCCC--UCUGCCAAUAAUUUGUUUAAUGGCAGCGUAAA-AAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAGGGCACC- .-------.................(((((--(((((((.(((.....))).))))))..((((-(((((((((...((((.....)))).)))))))))))))....))))))..- ( -30.70) >DroGri_CAF1 52653 104 + 1 UCUUUG---GUCCC-----CGUUGAUGGCA----UGCCAAUAAUUUGUUUAAUGGCAGCGUAAA-AAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAGGGUCCCG .....(---(..((-----(.(((((.((.----(((((.(((.....))).))))))).((((-(((((((((...((((.....)))).)))))))))))))))))))))..)). ( -32.90) >DroWil_CAF1 48849 93 + 1 G--CCU----UCCU----CA----UUGCCAU----GUCAAUAAUUUGUUUAAUGGCAGCGUAAA-AAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUCUGAUUAAGCC----- .--.((----(..(----((----(((((((----..(((....)))....))))))).....(-(((((((((...((((.....)))).)))))))))).)))..)))..----- ( -19.10) >DroMoj_CAF1 57361 111 + 1 CGUUUGUUGCUCGCCCCCAAAUUGAUGCCC----UGCCAAUAAUUUGUUUAAUGGCAGCGUAAA-AAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAGGGUCCA- ............(..(((........((.(----(((((.(((.....))).)))))).))(((-(((((((((...((((.....)))).))))))))))))......)))..).- ( -27.60) >DroAna_CAF1 42726 98 + 1 U--CAU---CUCUC----GUCCCGC-----AUUUCCCCAAUAAUUUGUUUAAUGGCAGCGUAAAAAAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAGCC----- .--...---.....----.....((-----......(((.(((.....))).))).......((((((((((((...((((.....)))).))))))))))))......)).----- ( -14.30) >consensus C__CAG___CUCUC____CAAUUGAUGCCA____UGCCAAUAAUUUGUUUAAUGGCAGCGUAAA_AAAUUAGACCAUAUUGAAUGUCAAUUGUUUGAUUUUUUGAUUAAGGG_____ ...................................((((.(((.....))).))))....((((.(((((((((...((((.....)))).)))))))))))))............. (-11.12 = -11.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:31 2006