Locus 9802

Sequence ID 3R_DroMel_CAF1
Location 26,040,524 – 26,040,618
Length 94
Max. P 0.707318
window15654

overview

Window 4

Location 26,040,524 – 26,040,618
Length 94
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 73.83
Mean single sequence MFE -21.94
Consensus MFE -2.44
Energy contribution -2.52
Covariance contribution 0.08
Combinations/Pair 1.17
Mean z-score -1.55
Structure conservation index 0.11
SVM decision value 0.37
SVM RNA-class probability 0.707318
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26040524 94 + 27905053
GGUCAACAGAUGUUGAAAACCUA-AAGAUAC----------UUUGGAGAAUGUCUUACUUUGAGUAAAGACCCUAGGUAGUUUAUUGUCUAAUUAACUACUUGCA
(((((((....)))))....(((-(((...)----------))))).....(((((((.....)).)))))))(((((((((.(((....))).))))))))).. ( -18.90)
>DroSec_CAF1 33304 93 + 1
GGUCAACAGAUGAUGAAAACCUA-AAGAUAC----------UUUGGAGAAUGUCU-CCUUUGAGUAAAGACCCUUUGUAGUUUAAUGUCUAAUUAACUACUUGUA
((((..((.....))........-....(((----------((.((((.....))-))...)))))..))))....((((((.(((.....)))))))))..... ( -20.20)
>DroSim_CAF1 34759 93 + 1
GGUCAACAGAUGCUAAGAACCUA-AAGAUAC----------UUUGGAGAAUGUCU-CCUUUGAGUAAAGACCCUAUGUAGUUUAUUGUCUAAUUAACUACUUGUA
((((...((...........)).-....(((----------((.((((.....))-))...)))))..))))....((((((.(((....))).))))))..... ( -18.00)
>DroEre_CAF1 38521 91 + 1
GUUCUACAGACGUUGAGAUCUUU-AAGAUACCUG-UGGGUAUUUGGAGAAUGUCU-CCUUUAAGUAAAGACCCCAGCUGGGUUAUUGCCUAAUU-----------
...........((((.(.(((((-((((((((..-..)))))))((((.....))-))......)))))).).))))(((((....)))))...----------- ( -25.30)
>DroYak_CAF1 34214 100 + 1
GGUCAACAGAUCUAGGCAACUUAGUAGAUAACUACUGAGUAUUUGGAGAAUGUCU-GCUCUGAGUAAAGAACCUAGCU----UAGUGCCUAAUUAGCAACUUAUA
((((....))))(((((((((((((((....)))))))))(((..(((.......-.)))..))).............----...)))))).............. ( -27.30)
>consensus
GGUCAACAGAUGUUGAAAACCUA_AAGAUAC__________UUUGGAGAAUGUCU_CCUUUGAGUAAAGACCCUAGGUAGUUUAUUGUCUAAUUAACUACUUGUA
((((...............(......)..............(((((((.........)))))))....))))................................. ( -2.44 =  -2.52 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:30 2006