Locus 9798

Sequence ID 3R_DroMel_CAF1
Location 26,030,191 – 26,030,298
Length 107
Max. P 0.832293
window15644

overview

Window 4

Location 26,030,191 – 26,030,298
Length 107
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 88.06
Mean single sequence MFE -29.11
Consensus MFE -21.94
Energy contribution -23.69
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.75
SVM decision value 0.72
SVM RNA-class probability 0.832293
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26030191 107 - 27905053
AUGGUAAGGUAAUAUUUAUAAACCAAUUCCAGUACGGCAGAUAAGUCUGCUGCUGUGGUGGGUAGUAUAUAUCAGCUUAUCGGUUCAUCGCCUAUAAGUUCGUAU-UU
.((((...(((.....)))..))))..((((.((((((((.........)))))))).))))......((((.(((((((.(((.....))).))))))).))))-.. ( -29.40)
>DroSim_CAF1 25004 107 - 1
AUGGUAAGGUGAUAUUUAUAAACCAAUUCCAGUACGGCAGAUAAGUCUGCUGCUGUGGUGGGUAGUAUAUAUCAGCUUAUCGGUUCAUCGCCUAUAAGUUAGUUU-UU
..((((((.((((((.(((..(((.((..((((..((((((....))))))))))..)).))).))).)))))).))))))(((.....))).............-.. ( -33.70)
>DroEre_CAF1 24474 106 - 1
AUGGUUUGGUGAUAUUUAUAAACCAAUUUCAGUACGGCAGAUAAGUCUGCUGCUGUGGUGGCCAGU--AUAUCAGCUUAUCGGUUCAUCGACUAUAAGAUAGUUACUU
.((((..(.((((((......((((....((((..((((((....)))))))))))))).......--)))))).)..)))).......((((((...)))))).... ( -26.52)
>DroYak_CAF1 23881 106 - 1
AUUGUUAGGUGAUAUUUAUAAACCAAUUUCAGUGUGGCAGAUAAGUCCGCUGCUGUGGUGAAGACU--AUAUCAGCUUAUCGCUUCAUCGGCUAUAAGUUAGCUUCUU
...((((..((((((......((((....(((((.(((......))))))))...)))).......--))))))((((((.(((.....))).))))))))))..... ( -26.82)
>consensus
AUGGUAAGGUGAUAUUUAUAAACCAAUUCCAGUACGGCAGAUAAGUCUGCUGCUGUGGUGGGUAGU__AUAUCAGCUUAUCGGUUCAUCGCCUAUAAGUUAGUUU_UU
.(((((((.((((((.......(((....((((..((((((....))))))))))...))).......)))))).))))))).......................... (-21.94 = -23.69 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:22 2006