Locus 9795

Sequence ID 3R_DroMel_CAF1
Location 26,023,421 – 26,023,525
Length 104
Max. P 0.500000
window15640

overview

Window 0

Location 26,023,421 – 26,023,525
Length 104
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 68.53
Mean single sequence MFE -26.62
Consensus MFE -2.58
Energy contribution -3.74
Covariance contribution 1.16
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.10
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26023421 104 - 27905053
CACCCCAAACAGUUCAGACGAGCGGGAAUA-----UACA-UACAUAUAUG-GUACAUAUAUGG-CAUGUGUGUGCAUGUGUUUUAUUUGUUUGUUUGGACAAUGACAUCCGA
...........(((((((((((((((((.(-----((((-(.((((((((-...))))))))(-(((....)))))))))).)).)))))))))))))))............ ( -31.80)
>DroPse_CAF1 21051 98 - 1
AG---CGAACUAUUCAGAGGCAUGUGUAUAUGCUGUCUGCUAUAUAUUUACAUACAUAUGGGACUAUGUGGGU----G-----UAUGUGUU--UAUAGACAAUGGCAUUUCU
.(---(............((((((....))))))(((((.((.((((.((((..((((((....))))))..)----)-----)).)))).--)))))))....))...... ( -24.40)
>DroSec_CAF1 17054 104 - 1
CACCCCAAACAGUCCCGACG-GCGGGAAUAUACUAUAUG-UACAUAUAUG-GUACAUAUAUGG-CAUGUGUGU----GUGUUUUAUUUGUUUGUUUAGACAAUGACAUCCGA
.....((((((((((((...-.)))))((((((((((((-(.((((((((-...)))))))))-)))))).))----)))).....)))))))................... ( -29.40)
>DroSim_CAF1 17754 99 - 1
CACCCCAAACAGUUCCGACG-GCGGGAAUA-----UAUG-UACAUAUAUG-GUACAUAUAUGG-CAUGUGUGU----GUGUUUUAUUUCUUUGUUUAGACAAUGACAUCCGA
...........(((..((((-(.(((((((-----.(..-((((((((((-.((......)).-)))))))))----)..)..))))))))))))..)))............ ( -22.80)
>DroPer_CAF1 20990 94 - 1
AG---CGAACUAUUCAGAGGCAUGUGUAUAUGCUGUCUGCUAUAU----ACAUACAUAUGGGACUAUGUGGGU----G-----UAUGUGUU--UAUAGACAAUGGCAUUUCU
.(---(............((((((....))))))(((((.(((((----(((..((((((....))))))..)----)-----))))))..--..)))))....))...... ( -24.70)
>consensus
CACCCCAAACAGUUCAGACG_GCGGGAAUAU_CU_UAUG_UACAUAUAUG_GUACAUAUAUGG_CAUGUGUGU____GUGUUUUAUUUGUUUGUUUAGACAAUGACAUCCGA
......................((((..........................(((((((......)))))))...............((((......))))......)))). ( -2.58 =  -3.74 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:18 2006