Locus 9794

Sequence ID 3R_DroMel_CAF1
Location 26,014,871 – 26,014,976
Length 105
Max. P 0.627546
window15639

overview

Window 9

Location 26,014,871 – 26,014,976
Length 105
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 85.06
Mean single sequence MFE -28.22
Consensus MFE -16.96
Energy contribution -18.20
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -2.28
Structure conservation index 0.60
SVM decision value 0.19
SVM RNA-class probability 0.627546
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26014871 105 + 27905053
AGAUAAAUCAUCUUUUGUCUGGC----------UUUGGGUCUUGGCAGUUGAGAUCUAAAAUGGUUACACCUUGGUAACUUUGAAAAUCUGCAGUUAAAAGCCAGAUAAAUCUUC
.............((((((((((----------(((((((((..(...)..)))))).....((((((......)))))).................)))))))))))))..... ( -28.70)
>DroSec_CAF1 8776 105 + 1
AGAUAAAUCAUCUUUUGUCUGGC----------UUUGGGUCUUGUGAGUUGAGAUCUAAAAUGGUUACACCUUGGUAACUUUGAAGAUCUGCAGUUAAAAGCCAGAUAAAUCUUC
.............((((((((((----------(((...((....)).(((((((((.....((((((......))))))....)))))).)))...)))))))))))))..... ( -29.70)
>DroSim_CAF1 8874 105 + 1
AGAUAAAUCAUCUUUUGUCUGGC----------UUUGGGUCUUGGCAGUUGAGAUCUAAAAUGGUUACACCUUGGUAACUUUGGAGAUCUGCAGUUAAAAGCCAGAUAAAUCUUC
.............((((((((((----------(((..((....))..(((((((((.....((((((......))))))....)))))).)))...)))))))))))))..... ( -31.80)
>DroEre_CAF1 9004 99 + 1
AGAUAAAUCAUCUUUUGUCUGGG----------UUUGGGUCUGGUGAGUUGAGAUCUGAAAUGGUUACACCUAGCUAACUUUGUAGAUCUGCACUUAAAAGGCAGU------AUC
(((((((......)))))))...----------.....((((..(((((..(((((((....(((((........)))))...)))))))..)))))..))))...------... ( -25.70)
>DroYak_CAF1 8875 106 + 1
AGAUAAAUCAUCUUUUGUCUGGUUUGUCUGAGUUUUGAGUUUUGCGAGUUGAGAUCUAAAAUGGUUACACCUUGGUAACUUUGAAGAUCUGCAGUUAAAAGACAGA---------
((((((((((.........)))))))))).........(((((...(..((((((((.....((((((......))))))....)))))).))..)..)))))...--------- ( -25.20)
>consensus
AGAUAAAUCAUCUUUUGUCUGGC__________UUUGGGUCUUGGGAGUUGAGAUCUAAAAUGGUUACACCUUGGUAACUUUGAAGAUCUGCAGUUAAAAGCCAGAUAAAUCUUC
(((((((......))))))).............(((((..(((...(((((((((((.....((((((......))))))....)))))).)))))..))))))))......... (-16.96 = -18.20 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:17 2006