Locus 9792

Sequence ID 3R_DroMel_CAF1
Location 26,005,904 – 26,005,997
Length 93
Max. P 0.727347
window15636

overview

Window 6

Location 26,005,904 – 26,005,997
Length 93
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 80.76
Mean single sequence MFE -22.30
Consensus MFE -15.64
Energy contribution -17.01
Covariance contribution 1.37
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.70
SVM decision value 0.42
SVM RNA-class probability 0.727347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26005904 93 - 27905053
----------------UUUCCGAUGCAAAACAAAAACAUUCGAAAGGUGCUGCCAACCUCCUUCAAAUCGGUAG-AAAAAUACCAA-AACAGCUGAUGAUGGUAGGCUGUA
----------------((((.((((...........)))).))))..(((.(((.(((...........((((.-.....))))..-..((.....))..))).))).))) ( -16.60)
>DroSec_CAF1 57987 106 - 1
AUGCAAAUUACUUCAAUAUCCGAUGCAAAACAAAAAAAUUGGGAAGGUGCUGCCAACUUGCUUCAAAUCGGUAG-AAAAAUACCAA-AACAGCUGG---UUGUAGGCUGUA
.((((.....((((.....(((((.............)))))))))..(((..(((((.(((.......((((.-.....))))..-...))).))---)))..))))))) ( -21.72)
>DroSim_CAF1 58416 90 - 1
----------------UUUCCGAUGCAAAACAAAAACAUUGGGAAGGUGCUGCCAACUUGCUUCAAAUUGGUAG-AAAAAUACCGA-AACAGCUGA---UUGUAGGCUGUA
----------------(((((((((...........)))))))))(((((((((((.(((...))).)))))))-.....))))..-.((((((..---.....)))))). ( -26.40)
>DroYak_CAF1 57981 92 - 1
----------------UUUCCGAUGCAAAACAAAAACAUUCGCCAGGUGCUGCCAACCUGCGGCGAAUCGGUAGUAAAAAUACCAAAAACAGCUGC---GAGUAGGCUGUA
----------------.....................(((((((((((.......))))..))))))).((((.......))))....((((((..---.....)))))). ( -24.50)
>consensus
________________UUUCCGAUGCAAAACAAAAACAUUCGGAAGGUGCUGCCAACCUGCUUCAAAUCGGUAG_AAAAAUACCAA_AACAGCUGA___UUGUAGGCUGUA
................(((((((((...........)))))))))(((((((((...............)))))......))))....((((((..........)))))). (-15.64 = -17.01 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:14 2006