| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,003,712 – 26,003,832 |
| Length | 120 |
| Max. P | 0.867434 |
| Location | 26,003,712 – 26,003,832 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.39 |
| Mean single sequence MFE | -55.98 |
| Consensus MFE | -37.65 |
| Energy contribution | -39.38 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26003712 120 + 27905053 UAGGUGCGCCUGCGAGUCACUGAACUCCGCGCUGGGCUACCUGGUCACGAUGAGGAUCUCCGAGGUCCGCCACUGCUUCGAGCUCCUCGGAGUGGCGCACGUAGAGGUGCUCGCAGGUGU .....(((((((((((.((((...((.((.((.((....))..(((((..((((((.(((.(((((........)))))))).))))))..))))))).)).)).))))))))))))))) ( -58.80) >DroSec_CAF1 55803 120 + 1 CAGGUGCGCCUGCGAGUCACUGAACUCCGUGCUGGGAUACCUGGUCACGAUGAGGAUCUCCGAGGUCCGGCACUGCUUCGAGCUCCUCGGAGUGGCGCACGUGGAGGUGCUCGCAGGUGU .....(((((((((((.((((...(..(((((.((....))..(((((..((((((.(((.(((((........)))))))).))))))..))))))))))..).))))))))))))))) ( -63.30) >DroSim_CAF1 56232 120 + 1 CAGGUGCGCCUGCGAGUCACUGAACUCCGUGCUGGGAUACCUGGUAACGAUGAGGAUCUCCGAGAUCCGGCACUGCUUCGAGCUCCUCGGAGUGGCGCACGUGGAGGUGCUCGCAGGUGU .....(((((((((((.(((....((((.(((..((...))..)))(((....(((((.....))))).((.(..(((((((...)))))))..).)).))))))))))))))))))))) ( -60.20) >DroEre_CAF1 55993 120 + 1 CAGGUGCGCCUGCGAGUCAGUGAACCACGUGCUGGGCUACCUGGUCACGAUGCGGGUCUCCGAGAUCCGGCACUGCUUCGAGCUGCUCGGAGUAGCGCACAUGGAGGUGCUCGCCGGCAU .......(((.(((((.((.(...((((((((..((...))..).))))...((((((.....))))))((.((((((((((...)))))))))).))...))).).))))))).))).. ( -54.60) >DroYak_CAF1 55824 120 + 1 UGGGUGCGCCUGCGAGCAAGUGAACUCCGUGCUGGACUACCUGGCCACGUUGCGCAUCUGCGAGGUGCGGCACUGCUUCGAGCUGCUCGGCGUGGCGCACAUGGAGGUGCUCGGAGGUGU .....((((((.((((((......((((((((.((....))..(((((((((.(((.((.((((((........)))))))).))).)))))))))))))..)))).)))))).)))))) ( -61.00) >DroAna_CAF1 100274 120 + 1 ACAGGCUGCCUGCGAAAGUCUUAACUCCAUCGUGGAGUACCUGGCUACCAUGCGCGUCUGCGAGAUUCGACAGUACCUGGAAUUUCUCGGCGUUCAGCAUGUGGAAGUGAUAGGUUGCGU ...((..(((.((....))....(((((.....)))))....)))..))..(((((.(((((.....)).))).(((((..((((((((((.....)).)).))))))..)))))))))) ( -38.00) >consensus CAGGUGCGCCUGCGAGUCACUGAACUCCGUGCUGGGCUACCUGGUCACGAUGAGGAUCUCCGAGAUCCGGCACUGCUUCGAGCUCCUCGGAGUGGCGCACGUGGAGGUGCUCGCAGGUGU .....((((((((((((.......(((((((((((.....)))))........(((((.....))))).((.((((((((((...)))))))))).))..))))))..)))))))))))) (-37.65 = -39.38 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:14 2006