Locus 9789

Sequence ID 3R_DroMel_CAF1
Location 26,000,411 – 26,000,503
Length 92
Max. P 0.965021
window15632

overview

Window 2

Location 26,000,411 – 26,000,503
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 88.80
Mean single sequence MFE -30.09
Consensus MFE -26.58
Energy contribution -26.67
Covariance contribution 0.09
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.88
SVM decision value 1.57
SVM RNA-class probability 0.965021
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26000411 92 - 27905053
UAUAG--CCAUGGCUAUAUCUAUAUAGUUGUAGCUGCCCGC--CC-CCGCCGAUCUCCUGGGCGGACCUCGCCUUGCAGAUACUAAAAAAGGCAGCA
(((((--(....))))))..............((((((.((--..-..))..((((.(.(((((.....))))).).)))).........)))))). ( -29.80)
>DroPse_CAF1 45827 95 - 1
UAUAGCUCUUUGGCUAUGUAGAUAUAGAUAUGGCC-CCAGCCACC-CCACCGAUCGCCUGGGCGGACCUAGCCUUGCAGAUACUAAAAAAGGCAGCA
....(((....((((((((........))))))))-...(((...-......(((((..((((.......)))).)).))).........)))))). ( -26.17)
>DroSim_CAF1 52887 92 - 1
UAUAG--CCAUGGCUAUAUCUAUAUAGAUGUAGCUGCCCGC--CC-CCGCCGAUCUCCUGGGCGGACCGCGCCUUGCAGAUACUAAAAAAGGCAGCA
....(--(...((((((((((....))))))))))))((((--((-.............))))))...(((((((.............))))).)). ( -31.94)
>DroEre_CAF1 52651 92 - 1
CAUAG--CCAUGGCUAUAUCUACAUAGAUAUGGCCGCCAGC--CC-CCGCCGAUCUCCUGGGCGGACCUCGCCUUGCAGAUACUAAAAAAGGCAGCA
....(--(...((((((((((....))))))))))(((.((--..-..))..((((.(.(((((.....))))).).)))).........))).)). ( -32.60)
>DroYak_CAF1 52478 93 - 1
UAUAG--CCAUGGCUAUAUCUAUAUAGAUAUAGCCGCCAGC--CCCCCGCCGAUCUCCUGGGCGGACCUCGCCUUGCAGAUACUAAAAAAGGCAGCA
....(--(...((((((((((....))))))))))(((.((--.....))..((((.(.(((((.....))))).).)))).........))).)). ( -32.90)
>DroPer_CAF1 45936 95 - 1
UAUAGCUCUUUGGCUAUGUAGAUAUAGAUAUGGCC-CCAGCCACC-CCGCCGAUCGCCUGGGCGGACCUAGCCUUGCAGAUACUAAAAAAGGCAGCA
....(((....((((((((........))))))))-.........-(((((.(.....).))))).....(((((.............)))))))). ( -27.12)
>consensus
UAUAG__CCAUGGCUAUAUCUAUAUAGAUAUAGCCGCCAGC__CC_CCGCCGAUCUCCUGGGCGGACCUCGCCUUGCAGAUACUAAAAAAGGCAGCA
...........((((((((((....))))))))))....((.....(((((.(.....).))))).....(((((.............))))).)). (-26.58 = -26.67 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:11 2006