| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,998,805 – 25,998,925 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 25,998,805 – 25,998,925 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.39 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -28.74 |
| Energy contribution | -28.05 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.92 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25998805 120 + 27905053 UGAUCGUAGGCAUCAUCAACCUCCUUCAUGGUGAACUUGUCACCGAAGUUCAUGAGCAUUUCGCGGAAUUUGUCACCGUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA ((((.(....))))).....((((((((((((((.....((..((((((.(....).))))))..)).....))))))((((((((.....).)))))))......)))))).))..... ( -30.00) >DroVir_CAF1 71418 120 + 1 UGAUCGAAGGCAUCAUCGACCUCCUUCAUGGUGAAUUUCUCACCGAAGCCCAUGAGCAUUUCGCGGAAUUUAUCACCAUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA (((((....).)))).....((((((((((((((.....((..((((((......))..))))..)).....))))))((((((((.....).)))))))......)))))).))..... ( -29.70) >DroPse_CAF1 44149 120 + 1 UGAUCGUAGGCAUCAUCGACCUCCUUCAUGGUGAACUUGUCACCGAAGUUCAUGAGCAUUUCGCGGAAUUUAUCACCGUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA .....((.((..((((((((........((((((.....))))))((((((....((.....)).))))))......))))))))..))...((..((((.....))))..)).)).... ( -31.50) >DroGri_CAF1 60176 120 + 1 UGAUCGAAGGCAUCAUCGACUUCCUUCAUGGUGAAUUUGUCACCGAAGCUCAUGAGCAUUUCGCGGAAUUUAUCACCAUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA (((((....).))))..(.((.((((((((((((.....((..(((((((....)))..))))..)).....))))))((((((((.....).)))))))......)))))).))).... ( -34.10) >DroWil_CAF1 53951 120 + 1 UGAUCGUAGGCAUCAUCGACUUCCUUCAUGGUGAAUUUGUCACCGAAGUUCAUGAGCAUUUCGCGGAAUUUAUCACCAUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA ((((.(....)))))..(.((.((((((((((((.....((..((((((.(....).))))))..)).....))))))((((((((.....).)))))))......)))))).))).... ( -30.90) >DroMoj_CAF1 66617 120 + 1 UGAUCGAAGGCAUCAUCGACCUCCUUCAUGGUGAAUUUGUCACCGAAGCCCAUGAGCAUUUCGCGGAAUUUAUCACCAUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA (((((....).)))).....((((((((((((((.....((..((((((......))..))))..)).....))))))((((((((.....).)))))))......)))))).))..... ( -30.80) >consensus UGAUCGAAGGCAUCAUCGACCUCCUUCAUGGUGAAUUUGUCACCGAAGCUCAUGAGCAUUUCGCGGAAUUUAUCACCAUCGAUGAGACCAUCGUUAUCGAAUGUUUUGAAGGCAGCAAUA (((((....).)))).....((((((((((((((.....((..((((((......))..))))..)).....))))))((((((((.....).)))))))......)))))).))..... (-28.74 = -28.05 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:10 2006