Locus 9787

Sequence ID 3R_DroMel_CAF1
Location 25,967,368 – 25,967,466
Length 98
Max. P 0.561590
window15630

overview

Window 0

Location 25,967,368 – 25,967,466
Length 98
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 89.37
Mean single sequence MFE -26.22
Consensus MFE -17.74
Energy contribution -18.74
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -2.23
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.561590
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25967368 98 + 27905053
GGAUUCAAAUGUAUCUGGAAU--GGGGCGAAGCUGAAUUCUCCUGCGGCUGCUUGAACUUUAAGCUUGCCGCACAAUUUCUUCGUUUUCUAUAUUUUCCC
(((...(((((((...(((((--((((.(((......))).)))(((((.((((((...))))))..)))))..........)))))).)))))))))). ( -27.60)
>DroSec_CAF1 19475 98 + 1
GGAUUCAAAUGUAUCUGGAAU--GGUGCGAAACUGAAUCCUCCUGCGGCUGCUUGAACUUUAAGCUUGCCGCACAUUUUCUUCGUUUUCUAUAUUUUCCC
(((((((..((((((......--))))))....)))))))...((((((.((((((...))))))..))))))........................... ( -29.40)
>DroSim_CAF1 19870 98 + 1
GGAUUCAAAUGUAUCUGGAAU--GGGGCAAAACUGAAUCUUCCUGCGGCUGCUUGAACUUUAAGCUUGCCGCACAUUUUCUUCGUUUUCUAUAUUUUCCC
(((...(((((((...(((((--((((.((((.((........((((((.((((((...))))))..))))))))))))))))))))).)))))))))). ( -25.80)
>DroEre_CAF1 17352 92 + 1
AGAUUCAAAUGUAUCUG--------GGCUAAACCGAAUCCUCCUGCGGCUGCUUGAACUUUAAGCUGGCCGCAUAUUUUCUUCGUUUUCUAUAUUUUCCC
......(((((((...(--------(......))(((......(((((((((((((...)))))).))))))).......)))......))))))).... ( -21.52)
>DroYak_CAF1 17644 100 + 1
GGAUUCAAAUGUAUCUGGAGUGUGGGGCAUAACCGAAUCCCCUGGAGGCGGCUUGAACUUUAAGCUUGCCGCACAUUUUCUUCGUUUUCUAUAUUUUCCC
(((...(((((((..(((((((((.((((....((..(((...)))..))((((((...)))))).)))).))))....))))).....)))))))))). ( -26.80)
>consensus
GGAUUCAAAUGUAUCUGGAAU__GGGGCAAAACUGAAUCCUCCUGCGGCUGCUUGAACUUUAAGCUUGCCGCACAUUUUCUUCGUUUUCUAUAUUUUCCC
((((........))))((((.....((.(((((.(((......((((((.((((((...))))))..)))))).......)))))))))).....)))). (-17.74 = -18.74 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:09 2006