Locus 9783

Sequence ID 3R_DroMel_CAF1
Location 25,958,907 – 25,959,010
Length 103
Max. P 0.707388
window15626

overview

Window 6

Location 25,958,907 – 25,959,010
Length 103
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -44.17
Consensus MFE -27.14
Energy contribution -28.37
Covariance contribution 1.23
Combinations/Pair 1.28
Mean z-score -2.07
Structure conservation index 0.61
SVM decision value 0.37
SVM RNA-class probability 0.707388
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25958907 103 + 27905053
CUC---CUUCGCGGGCAGUUCGCUGGCCGAAAGCGAUC----UGAUGCUUGAGAUCGCGUUGCUUACUGCCGGGCGUUGAUGAUGUCCACGAACUCGGGCUUCAGGGAGG
(((---(.((((((.(((....))).))....)))).(----(((.(((((((.(((....((.....)).(((((((...))))))).))).))))))).)))))))). ( -43.40)
>DroVir_CAF1 18661 97 + 1
UUU---UUGUGGGGGCAGUUUGCGAGCUGCUG------CAAGUGCGGUCCAGGCC----GCAUUUACUUGCGGGCGUUGAUGAUGUCUACAAACUCUGGCUUCAGGGAUG
..(---(((((((.(..(((.(((..((((.(------.(((((((((....)))----)))))).)..)))).))).)))..).))))))))(((((....)))))... ( -37.20)
>DroSec_CAF1 11075 103 + 1
CUC---CUCCGCGGGCAGUUCGCUGGCCGAAAGCGAUC----UGAUGCUUGAGAUCGAAGUGCUUACUGCCGGGCGUUGAUGAUGUCCACGAACUCGGGCUUCAGGGAGG
..(---((((.(((.(((....))).)))........(----(((.(((((((.(((..(.((.....)))(((((((...))))))).))).))))))).))))))))) ( -46.10)
>DroSim_CAF1 11062 106 + 1
CUCCUCCUCCGCGGGCAGUUCGCUGGCCGAAAGCGAUC----UGAUGCUUGAGAUCGAAGUGCUUACUGCCGGGCGUUGAUGAUGUCCACGAACUCGGGCUUCAGGGAGG
.....(((((.(((.(((....))).)))........(----(((.(((((((.(((..(.((.....)))(((((((...))))))).))).))))))).))))))))) ( -46.10)
>DroEre_CAF1 9037 103 + 1
CUC---CUCCGCGGGCAGUUCGCUGGCCGAUAGCGAUC----UGAUGCUUGAGAUCGGAGUGCUUACUGGCGGGCGUUGAUGAUGUCCACGAACUCGGGCUUCAGGGAGG
..(---((((.(((.(((....))).)))........(----(((.(((((((.(((....(((....)))(((((((...))))))).))).))))))).))))))))) ( -47.50)
>DroYak_CAF1 9124 103 + 1
CUC---CGCCGCGGGCAGUUCGCUGGCUAAAAGCAAUC----UGAUGCUUGAGAUCGGAGCGCUUACUGGCGGGCAUUGAUGAUGUCCACGAACUCGGGCUUCAGGGAGG
(((---((((((((.....)))).)))..........(----(((.(((((((.(((....(((....)))(((((((...))))))).))).))))))).)))))))). ( -44.70)
>consensus
CUC___CUCCGCGGGCAGUUCGCUGGCCGAAAGCGAUC____UGAUGCUUGAGAUCGAAGUGCUUACUGCCGGGCGUUGAUGAUGUCCACGAACUCGGGCUUCAGGGAGG
......((((.(((.(((....))).))).............(((.(((((((.(((.((......))...(((((((...))))))).))).))))))).))).)))). (-27.14 = -28.37 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:05 2006