Locus 9781

Sequence ID 3R_DroMel_CAF1
Location 25,946,966 – 25,947,067
Length 101
Max. P 0.807096
window15623

overview

Window 3

Location 25,946,966 – 25,947,067
Length 101
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 86.80
Mean single sequence MFE -29.20
Consensus MFE -21.62
Energy contribution -21.02
Covariance contribution -0.61
Combinations/Pair 1.19
Mean z-score -3.40
Structure conservation index 0.74
SVM decision value 0.64
SVM RNA-class probability 0.807096
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25946966 101 + 27905053
AAAAUGUUCAUAGUUUUU--UGCUGGAAGGCUCAAACAAGUUUUUUGGUGAUGGUUGUAUUCUGGUUUAUAACUUUCAAGCAAAAAUGCUGUGACGAGAAA------AA
....(((.((((((((((--((((((((((((......))))))))..(((.(((((((........))))))).))))))))))).))))))))).....------.. ( -27.10)
>DroPse_CAF1 77142 101 + 1
AAAAUGUUCAUAGCUUUUGCUGCUCGAAGGCUCGAAGAGGUU-UUUGGUGAUGGUUGUAGUUGUUUUUAUGACUUUCAAGCUCAAAAGCUGUGGCGA-AAA------AA
....(((.(((((((((((..(((((((((((......))))-)))).(((.(((..(((......)))..))).)))))).)))))))))))))).-...------.. ( -31.60)
>DroSec_CAF1 80979 101 + 1
AAAAUGUUCAUAGUUUUU--UGCUGGAAGGCUCAAACAAGUUUUUUGGUGAUGGUUGUAUUCUGUUUUAUAACUUUCAAGCAAAAAUGCUGUGACAACAAA------AA
....(((.((((((((((--((((((((((((......))))))))..(((.(((((((........))))))).))))))))))).))))))))).....------.. ( -27.80)
>DroEre_CAF1 81726 101 + 1
AAAAUGUUCAUAGUUUUU--UGCUGGAAGGCUCAAACAAGUUUUUUGGUGAUGGUUGUAUUCUGUUUUAUAACUUUCAAGCAAAAAUGCUGUGACAACAAA------AA
....(((.((((((((((--((((((((((((......))))))))..(((.(((((((........))))))).))))))))))).))))))))).....------.. ( -27.80)
>DroAna_CAF1 73517 105 + 1
AAAAUGUUCAUAGUU-UU--UGCUGGAAGGCUCAAACAAGUUU-UUGGUGAUGGUUGUAUUCUUUUUUAUAACUUUCAAGCGCAAAAGCUGUGACGACAAAAAAAAAAA
....(((((((((((-((--(((..(((((((......)))))-))..(((.(((((((........))))))).)))...)))))))))))))..))).......... ( -29.30)
>DroPer_CAF1 76087 101 + 1
AAAAUGUUCAUAGCUUUUGCUGCUCGAAGGCUCGAAGAGGUU-UUUGGUGAUGGUUGUAGUUGUUUUUAUGACUUUCAAGCUCAAAAGCUGUGGCGA-AAA------AA
....(((.(((((((((((..(((((((((((......))))-)))).(((.(((..(((......)))..))).)))))).)))))))))))))).-...------.. ( -31.60)
>consensus
AAAAUGUUCAUAGUUUUU__UGCUGGAAGGCUCAAACAAGUUUUUUGGUGAUGGUUGUAUUCUGUUUUAUAACUUUCAAGCAAAAAAGCUGUGACGACAAA______AA
....(((.((((((.......((..(((((((......)))))))..))((.(((((((........))))))).))..........)))))))))............. (-21.62 = -21.02 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:02 2006