Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,946,076 – 25,946,177 |
Length | 101 |
Max. P | 0.799825 |
Location | 25,946,076 – 25,946,177 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.63 |
Mean single sequence MFE | -44.04 |
Consensus MFE | -27.42 |
Energy contribution | -27.32 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.27 |
Mean z-score | -1.74 |
Structure conservation index | 0.62 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25946076 101 - 27905053 ---UGACCC-----CGAUGCCC--CAUCCAUCAGGCUGUUCUCAUCGAUGCCACUGUCGCUGGAGGCAUCCGUGUCGCAGGCUGUCAAGCCGGGUGGCACCGAGUCAUCUA ---((((..-----((.(((((--(......(((.((((...(((.((((((.((......)).)))))).)))..)))).)))........)).)))).)).)))).... ( -38.34) >DroVir_CAF1 119648 107 - 1 ---CGACCUCCUGGCCAUA-CCCGUCUCGACCAGGCUGAUGUCAUCGAUGCCGCUGUCACUGGAGGCAUCCGUGUCGCAGGCAGUCAGUGCCGGCGGCAUGAAAUCAUCUA ---......(((((.(...-........).)))))..((((...((.(((((((((.((((((..((...((...))...))..)))))).)))))))))))...)))).. ( -39.50) >DroPse_CAF1 76244 101 - 1 ---CGACAC-----CGAUGAUC--CGUCGACGAGGCUGUUCUCGUCGAUGCCGCUGUCGCUGGAGGCAUCUGUGUCGCAGGCCGUCAGGCCCGGCGGCACGGAGUCGUCCA ---(((((.-----((......--(((((((((((....))))))))))).)).)))))..((((((.((((((((((.((((....))))..))))))))))))).))). ( -54.30) >DroMoj_CAF1 115594 95 - 1 ---CGAGCU-------------CGAGUCGGCCAGGCUGUUCUCAUCGAAGCUGCUGUCACUGGAGGCAUCCGUGUCGCAGGCGGUCAAGCCCGGCGGCAUGGAAUCAUCUA ---.((.((-------------(.(((.(((..((((...........))))...)))))).)))...((((((((((.(((......)))..)))))))))).))..... ( -37.40) >DroAna_CAF1 72654 104 - 1 CGAUGACCC-----CGAUGCCC--CAUCCACCAGGCUGUUCUCAUCGAUGCCGCUGUCGCUGGAGGCAUCUGUGUCGCAGGCCGUUAAGCCCGGCGGCACCGAAUCGUCCA .(((((...-----.(((((((--((.(.((..(((...((.....)).)))...)).).))).)))))).(((((((.(((......)))..)))))))....))))).. ( -40.40) >DroPer_CAF1 75189 101 - 1 ---CGACAC-----CGAUGAUC--CGUCGACGAGGCUGUUCUCGUCGAUGCCGCUGUCGCUGGAGGCAUCUGUGUCGCAGGCCGUCAGGCCCGGCGGCACGGAGUCGUCCA ---(((((.-----((......--(((((((((((....))))))))))).)).)))))..((((((.((((((((((.((((....))))..))))))))))))).))). ( -54.30) >consensus ___CGACCC_____CGAUG_CC__CGUCGACCAGGCUGUUCUCAUCGAUGCCGCUGUCGCUGGAGGCAUCCGUGUCGCAGGCCGUCAAGCCCGGCGGCACGGAAUCAUCCA .................................((.(((((.....((((((.((......)).))))))((((((((.(((......)))..))))))))))).)).)). (-27.42 = -27.32 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:01 2006