Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,161,828 – 3,161,946 |
Length | 118 |
Max. P | 0.985394 |
Location | 3,161,828 – 3,161,946 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -37.78 |
Consensus MFE | -29.92 |
Energy contribution | -31.04 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.19 |
Mean z-score | -2.54 |
Structure conservation index | 0.79 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3161828 118 + 27905053 AGGAACUGCAUAGAAUGCACACCCUGGGGUCACAGCGGAAGCUGUAAUGAGUUAUUUGAGGCAAUUAAAUGGCAACGUUUCCCCCGAGGUUUUAGAUGUCUCAUUUUU-CCCCUAUACC- (((...(((((...)))))...)))((((..(((((....)))))((((((.((((((((((....(((((....)))))........)))))))))).))))))...-))))......- ( -39.30) >DroSec_CAF1 9712 118 + 1 AGGAACUGCAUAGAAUGCACACCCUGGGGUCACAGCGGAAGCUGUAAUGACUUAUUUGAGGCAAUUAAAUGGCAACGUUUCCCCA-GGGUUUUACAUAUCUCCGUUUUCCCCCUAUACC- .((((..((..((((((...(((((((((..(((((....)))))..((.(((....))).))...(((((....))))))))))-))))....))).)))..)).)))).........- ( -39.40) >DroSim_CAF1 11880 118 + 1 AGGAACUGCAUAGAAUGCACACCCUGGGGUCACAGCGGAAGCUGUAAUGAGUUAUUUGAGGCAAUUAAAUGGCAACGUUUCCCCA-GGGUUUUACAUGUCUCCUUUUUCCCCCUAUACC- (((((((((((...))))).(((((((((.((((((....))))).....(((((((((.....)))))))))...)...)))))-)))).......)).))))...............- ( -41.30) >DroEre_CAF1 1472 118 + 1 AGGAACUGCAUAGAAUGCACAACCUGCGGUCACAGCGGAAGCUGUAAUGAGUUAUUUGAGGCAAUUAACUGGCAACGUUUCCCCA-GGGUUUCAGAUGUCUUCUUUUCCUCCCUAUACA- (((((.......((.((((.....)))).))(((((....)))))...(((.((((((((((......((((..........)))-).)))))))))).)))...))))).........- ( -30.90) >DroYak_CAF1 11298 118 + 1 AGGAGCUGCAUAGAAUGUGCAACCUGGGGUCACAGCGGAAGCUGUAAUGAGUUAUUCGAGGCAAUUAACUGGCAACUUCUCCCCA-GGGCUUUAGAUGUCUCCUCUUUC-CCCUAUACCA (((((((((((.....))))).(((((((..(((((....)))))...(((((...(.((........)).).)))))..)))))-)).........).))))).....-.......... ( -38.00) >consensus AGGAACUGCAUAGAAUGCACACCCUGGGGUCACAGCGGAAGCUGUAAUGAGUUAUUUGAGGCAAUUAAAUGGCAACGUUUCCCCA_GGGUUUUAGAUGUCUCCUUUUUCCCCCUAUACC_ (((...(((((...)))))...)))((((..(((((....)))))...(((.((((((((((....(((((....)))))((....)))))))))))).))).......))))....... (-29.92 = -31.04 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:17 2006