Locus 9778

Sequence ID 3R_DroMel_CAF1
Location 25,932,499 – 25,932,596
Length 97
Max. P 0.941914
window15619

overview

Window 9

Location 25,932,499 – 25,932,596
Length 97
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 83.25
Mean single sequence MFE -31.57
Consensus MFE -25.65
Energy contribution -26.90
Covariance contribution 1.25
Combinations/Pair 1.10
Mean z-score -3.01
Structure conservation index 0.81
SVM decision value 1.32
SVM RNA-class probability 0.941914
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25932499 97 - 27905053
ACCGUCUGUUAUUUUUAUUCCCCAUUUGUGCUUC--UGGUCGUGAUGGGCGCGCUUAUCACGCGUGCUAAUCACGAUAGAAGUGCGUUGUC--CAUAUUCC
...........................(..((((--((.(((((((.(((((((.......))))))).)))))))))))))..)......--........ ( -34.30)
>DroSec_CAF1 58275 97 - 1
ACCGUCUGUUAUUUUUAUUCCCCAUUUGUGCUUC--UGGUCGUGAUGGGCGCGCUUAUCACGCGUGCUAAUCACGAUAGAAGUGCGUUGUC--CAUAUUCC
...........................(..((((--((.(((((((.(((((((.......))))))).)))))))))))))..)......--........ ( -34.30)
>DroSim_CAF1 60066 97 - 1
ACCGUCUGUUAUUUUUAUUCCCCAUUUGUGCUUC--UGGUCGUGAUGGGCGCGCUUAUCACGCGUGCUAAUCACGAUAGAAGUGCGUUGUC--CAUAUUCC
...........................(..((((--((.(((((((.(((((((.......))))))).)))))))))))))..)......--........ ( -34.30)
>DroEre_CAF1 67136 97 - 1
ACCGUUUGUUAUUUUUAUUCCACAUUUGUGCUUC--UGGUCGUGAUGGGCGCGCUUAUCACGCGUGCUAAUCACGAUAGAAGUGCGUUGCC--CAUAUUCC
...........................(..((((--((.(((((((.(((((((.......))))))).)))))))))))))..)......--........ ( -34.30)
>DroYak_CAF1 68004 97 - 1
ACAGUCUGUUAUUUUUAUUCCACAUUUGUGCUUC--UGGUCGUGAUGGGCGUGCUUAUCACGCGUGCUAAUCACGAUAGAAGUGCGUUGCC--CACAUUCC
...........................(..((((--((.(((((((.(((((((.......))))))).)))))))))))))..)......--........ ( -29.50)
>DroPer_CAF1 59478 82 - 1
--AGUCUGUCCC------UCUGCCUCUGUGCAUGGACAGUCGUGUUGG-----------ACUCGUGCUAAUCACGAUAGGAGUGCGUUUACACGUCAUGCC
--...((((((.------..(((......))).))))))(((((((((-----------.(....))))).)))))..((.((((((....))).))).)) ( -22.70)
>consensus
ACCGUCUGUUAUUUUUAUUCCCCAUUUGUGCUUC__UGGUCGUGAUGGGCGCGCUUAUCACGCGUGCUAAUCACGAUAGAAGUGCGUUGUC__CAUAUUCC
...........................(..((((....((((((((.(((((((.......))))))).)))))))).))))..)................ (-25.65 = -26.90 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:59 2006