Locus 9776

Sequence ID 3R_DroMel_CAF1
Location 25,916,978 – 25,917,072
Length 94
Max. P 0.864298
window15616

overview

Window 6

Location 25,916,978 – 25,917,072
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.19
Mean single sequence MFE -19.22
Consensus MFE -12.71
Energy contribution -13.10
Covariance contribution 0.39
Combinations/Pair 1.12
Mean z-score -2.04
Structure conservation index 0.66
SVM decision value 0.84
SVM RNA-class probability 0.864298
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25916978 94 - 27905053
CCGGGU------UUCCCUCGGUUCUCCACUUGCGUAAUUUGCAAUUACGAUGGGAAACUU-UUCCCACCCCCUCCGGCUUUUC--UGCUCACCACACUUCUGU
..((((------(((((((((....))..(((((.....)))))....)).)))))))..-..............(((.....--.)))..)).......... ( -21.50)
>DroSec_CAF1 42571 94 - 1
UCGGGU------UUCCCUCAGUUCUCCACUUGCGUAAUUUGCAAUUACGAUGGGAAACUU-UUCCCACUCCCUCCGGCUUUUC--UGCUCACCACACUGCUGU
..(((.------.......((((..(((....((((((.....)))))).)))..)))).-........)))..((((.....--.............)))). ( -18.60)
>DroSim_CAF1 42844 94 - 1
CCGGGU------UUCCCUCGGUUCUCCACUUGCGUAAUUUGCAAUUACGAUGGGAAACUU-UUCCCACUCCCUCCGGCUUUUC--UGCUCACCACACUGCUGU
..((((------(((((((((....))..(((((.....)))))....)).)))))))..-..............(((.....--.)))..)).......... ( -21.50)
>DroEre_CAF1 50899 93 - 1
CCGGGU------UUCCAUUG-CUCUCCACUUGCGUAAUUUGCAAUUACGAUGGGAAACUU-UUCCCACACCCGCCGGCUUUUC--CGCCCAACACCCUUCUGU
.(((((------........-...........((((((.....)))))).((((((....-)))))).)))))..(((.....--.))).............. ( -21.90)
>DroYak_CAF1 51258 99 - 1
CCGGGUCCCUCCUUCCCCUGCCCCUCCACUUGCGUAAUUUGCAAUUACGAUGGGAAAGUU-UUC-CACCCCCUCCGGCUUUUC--CACACACCCCACUUCUGU
..((((..........................((((((.....)))))).((((((((((-...-..........))))))))--))...))))......... ( -17.82)
>DroAna_CAF1 42643 88 - 1
CU-------------CCUUA-CCCUCCAUUUGCGUAAUUUGCAAUUACGAUGGUAAAGUUUUUCCCACUCCUUUAGGAAAUUCUCUCCACAGCCCCCAACUG-
..-------------..(((-((.((...(((((.....)))))....)).)))))((..(((((..........)))))..))..................- ( -14.00)
>consensus
CCGGGU______UUCCCUCGGCUCUCCACUUGCGUAAUUUGCAAUUACGAUGGGAAACUU_UUCCCACUCCCUCCGGCUUUUC__UGCUCACCACACUUCUGU
((((............................((((((.....)))))).((((((.....))))))......)))).......................... (-12.71 = -13.10 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:56 2006