Locus 9774

Sequence ID 3R_DroMel_CAF1
Location 25,895,967 – 25,896,069
Length 102
Max. P 0.814694
window15612

overview

Window 2

Location 25,895,967 – 25,896,069
Length 102
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 72.51
Mean single sequence MFE -23.96
Consensus MFE -1.76
Energy contribution -3.16
Covariance contribution 1.40
Combinations/Pair 1.19
Mean z-score -1.73
Structure conservation index 0.07
SVM decision value 0.66
SVM RNA-class probability 0.814694
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25895967 102 + 27905053
UUCAACC--AUCCUCCCCUUUUAUUCCCUUAAAAUUCGAGCAUGAUGAUGGUGAUGGAAG---GUACAGUGGAAUUACCAAAGGAUGGUCUGCUAUAAAAUGCACUU
....(((--(((((..((((((((..((.....................))..)))))))---).....(((.....))).)))))))).(((........)))... ( -25.10)
>DroSec_CAF1 23168 97 + 1
ACCAUCC--AUCCUCCCCUUUUAUUCGCUUAAAAUUCGAGCAUGAUGAUGGUGAU--------GUACAGUGGAAUUACCAAAGGAUGGUCUGCUAUAAAAAGCACUU
(((((((--.................((((.......)))).......(((((((--------..........)))))))..))))))).((((......))))... ( -23.80)
>DroSim_CAF1 23238 101 + 1
UCCAUCC--AUCC-CCCCUUUUAUUCGCUUAAAAUUCGAGCAUGUUGAUGGUGAUGGAAG---GUACAGUGGAGUUACCAAAGGAUGGUCUGCUAUAAAAAGCACUU
.((((((--....-..((((((((.((((...(((........)))...)))))))))))---).....(((.....)))..))))))..((((......))))... ( -26.00)
>DroEre_CAF1 31134 84 + 1
UUCAUAUACAUCCUCCCCUUUUAUACCCCGAAAAUUCGA------UGAUGAUGAUGGGAG---GUACAGUGGAA--------------AGUGCUGUGAAAUACACUG
...........((((((...((((....(((....))).------..))))....)))))---)((((((....--------------...)))))).......... ( -18.20)
>DroYak_CAF1 30410 86 + 1
UCCAUUUAUCUCCUCCCAUUUUACUCCCUGAAAAUUCGA------UGAUGAUGAUGGAAGGUGGUACAGUGGAG--------------AGUGCUAUAAAAAGCACU-
((((((((((.(((.(((((....((..(((....))).------.))....))))).))).)))).)))))).--------------((((((......))))))- ( -26.70)
>consensus
UCCAUCC__AUCCUCCCCUUUUAUUCCCUUAAAAUUCGAGCAUG_UGAUGGUGAUGGAAG___GUACAGUGGAAUUACCAAAGGAUGGUCUGCUAUAAAAAGCACUU
.(((((......(((...(((((......)))))...)))......))))).......................................(((........)))... ( -1.76 =  -3.16 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:53 2006