Locus 9773

Sequence ID 3R_DroMel_CAF1
Location 25,893,029 – 25,893,129
Length 100
Max. P 0.505457
window15611

overview

Window 1

Location 25,893,029 – 25,893,129
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -30.65
Consensus MFE -24.98
Energy contribution -24.98
Covariance contribution 0.00
Combinations/Pair 1.24
Mean z-score -1.78
Structure conservation index 0.82
SVM decision value -0.06
SVM RNA-class probability 0.505457
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25893029 100 - 27905053
CCAGCUUGGGCUUGACUUCCUGCUGAUCCUCUGCAGUUUCAAUGUCCUGCUUGAUGUCAUCAUUGCAGUCGCGCAAGCUGGGCACUGAAAUAAGUAAUA--U
((((((((.((((((....((((.(.....).))))..))))....((((.((((...))))..))))..)).))))))))..(((......)))....--. ( -31.60)
>DroSec_CAF1 20140 100 - 1
CCAGCUUGGGCUUGACUUCCUGCUGAUCCUCUGCAGUUUCAAUGUCCUGCUUAAUGGCAUCAUUGCAGUCGCGCAAGCUGGGCACUGAAAUAAGUAAUA--U
((((((((.((..((((..((((.(.....).))))...(((((...((((....)))).))))).)))))).))))))))..(((......)))....--. ( -33.80)
>DroSim_CAF1 20209 100 - 1
CCAGCUUGGGCUUGACUUCCUGCUGAUCCUCUGCAGUUUCAAUGUCCUGCUUAAUGGCAUCAUUGCAGUCGCGCAAGCUGGGCACUGAAAUAAGUAAUA--U
((((((((.((..((((..((((.(.....).))))...(((((...((((....)))).))))).)))))).))))))))..(((......)))....--. ( -33.80)
>DroEre_CAF1 28017 102 - 1
CUAGCUUGGGCUUGACCUCCUGCUGAUCCUCGACAGCUUCAAUGUCCUGUUUAAUGGCAUCAUUGCAGUCGCGCAAGCUGGGCACUGAAAUAAGUAAUAAUA
((((((((.((..(((.....((((........))))..(((((.((........))...)))))..))))).))))))))..(((......)))....... ( -27.80)
>DroYak_CAF1 27425 100 - 1
CUAGCUUGGGCUUGAUCUCCUGCUGAUCUUCUAGAGCUUCAAUGUCCUGCUUAAUGGCAUCAUUGCAGUCGCGCAAGCUGGGCACUGAAAUUAGUAAUA--U
((((((((.((..((((.......)))).....((.((.(((((...((((....)))).))))).)))))).))))))))..((((....))))....--. ( -30.70)
>DroAna_CAF1 20077 99 - 1
CCAGCUUGGGCUUGACCUCCUUCUGCUCCUCCGGGGCGUCUAUAUCCUGCUUGAUGGUCUCAUUGCAAUCCCGCAAGCUGGGCACUAAAAUGGGGAAUC---
((((((((((...(((((((............)))).))).......(((.(((.....)))..)))...)).))))))))..................--- ( -26.20)
>consensus
CCAGCUUGGGCUUGACCUCCUGCUGAUCCUCUGCAGCUUCAAUGUCCUGCUUAAUGGCAUCAUUGCAGUCGCGCAAGCUGGGCACUGAAAUAAGUAAUA__U
((((((((.((..(((.....((((........))))......)))((((..((((....))))))))..)).))))))))..................... (-24.98 = -24.98 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:52 2006