Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,891,915 – 25,892,033 |
Length | 118 |
Max. P | 0.891260 |
Location | 25,891,915 – 25,892,033 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -31.12 |
Energy contribution | -31.48 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.08 |
Mean z-score | -1.50 |
Structure conservation index | 0.88 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25891915 118 - 27905053 AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGUUAGUUGUCUUCGCUGGAUGAGUAAGUCCCAUUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG (((((((.........((((((((((...........)))))))))).(((((((((((((..((((((.........)))).))..)))))))).....))))).)))))))..... ( -36.90) >DroSec_CAF1 19012 118 - 1 AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGAUAGUUGUCAUCGCUGGAUGAGUAAGUCCCACUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG (((((((........(((((((((....(((....))).)))))))))(((((((((((((..((((((.........)))).))..)))))))).....))))).)))))))..... ( -37.10) >DroSim_CAF1 19079 118 - 1 AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGUUAGUUGUCAUCGCUGGAUGAGUAAGUCCCACUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG (((((((........(((((((((((...........)))))))))))(((((((((((((..((((((.........)))).))..)))))))).....))))).)))))))..... ( -38.10) >DroEre_CAF1 26904 116 - 1 AAAACACCGAUAAUUUGGCAAUUGGCGACUCUGCGGAGUUAGUUGUCUUCGCUGGGUGACUAAGCCCCAUUUAGACCCUGGGUUUCGAAUCGUCUAUAUUGGCGACAAGUUUUAAC-- (((((..(((......((((((((((..(.....)..))))))))))...(((((....)).)))((((.........))))..)))..(((((......)))))...)))))...-- ( -30.50) >DroYak_CAF1 26303 118 - 1 AAAACACCGAUGAUUUGGCAAUUGGCGACUCUGUGGAGUUAGUUGUCUUCGCUGGGUGAGUAAGCCCCAUUAAAACCCUCGGUUUCGACUCGUCCACAUUGGCGACGUGUUUUAAUCG (((((((.........((((((((((..(.....)..)))))))))).(((((((..(((((((((..............)))))..))))..)).....))))).)))))))..... ( -34.14) >consensus AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGUUAGUUGUCUUCGCUGGAUGAGUAAGUCCCAUUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG (((((((.........((((((((...((((....)))))))))))).(((((((((((((....((((.........)))).....)))))))).....))))).)))))))..... (-31.12 = -31.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:49 2006