Locus 9770

Sequence ID 3R_DroMel_CAF1
Location 25,886,346 – 25,886,439
Length 93
Max. P 0.812293
window15607

overview

Window 7

Location 25,886,346 – 25,886,439
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 89.76
Mean single sequence MFE -27.46
Consensus MFE -21.28
Energy contribution -21.28
Covariance contribution -0.00
Combinations/Pair 1.09
Mean z-score -1.83
Structure conservation index 0.77
SVM decision value 0.65
SVM RNA-class probability 0.812293
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25886346 93 - 27905053
CCGUAGCUGCAGUUACGAUCUGUUCAAGAUCGCGUGUGCUGCAAUCGAAAGAGUCGACCGAUAGGCAAAAGGUUAGCGAUGAACAAUCGGAAA
(((((((.(((....((((((.....))))))..))))))))..((....))((..(((...........)))..))(((.....)))))... ( -26.60)
>DroSec_CAF1 13471 92 - 1
CCGUAGCUGCAGUUACGAUCUGUUCAAGAUCGCGCGUGCUGCAAUCGAAAGAGUCGACCGAUAGGCAAA-GGUUAGCGAUGAACAAUCGGAAA
((((((((((.....((((((.....)))))).))).)))))..((....))((..(((..........-)))..))(((.....)))))... ( -27.30)
>DroSim_CAF1 13434 87 - 1
CCGUAGCUGCAGUUACGAUCUGUUCAAGAUCGCGUGUGCUGCAAUCGAAAGAGUCGACCGAUAGGCAAA------GCGAUGAACAAUCGGAAA
(((((((....)))))(((.((((((...((((...((((....((....))(((....))).))))..------)))))))))))))))... ( -28.80)
>DroEre_CAF1 21286 92 - 1
CCGUUGCUGCAGUUACGAUCUGUUCAAGAUCG-GAGUGCUGUAAUCGAAAGCGUCGAUCGAUAAGCAAGGGGUUAGCGAUGGACAAUCGAAAA
((.((((((((((..((((((.....))))))-....))))).(((((.....))))).....))))).)).....((((.....)))).... ( -29.80)
>DroYak_CAF1 13645 92 - 1
CCGUAGCUGCAGUUACGAUCUGUUCAAGUUCG-GAGUGCUGCAAUCGAAAGCGUCGAUCGAUAAGCAAAAGUUUAGCGACGGACAAUCGAAAA
((((.((((((((..(((.((.....)).)))-....))))))(((((.....)))))...(((((....))))))).))))........... ( -24.80)
>consensus
CCGUAGCUGCAGUUACGAUCUGUUCAAGAUCGCGAGUGCUGCAAUCGAAAGAGUCGACCGAUAGGCAAA_GGUUAGCGAUGAACAAUCGGAAA
.....((((((((..((((((.....)))))).....)))))..((((.....))))......)))..........((((.....)))).... (-21.28 = -21.28 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:48 2006