| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,882,516 – 25,882,624 |
| Length | 108 |
| Max. P | 0.601470 |
| Location | 25,882,516 – 25,882,624 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.32 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -16.70 |
| Energy contribution | -17.73 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25882516 108 + 27905053 GCUAUAAU--UUUAGCUAUUUU---A----UAACUACUCAUGUCCGUUGUGAGCCG---AGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGCAGAAAGAAACAGCAAAAAAGGGG (((.....--..(((((..(((---(----((((.((....))..))))))))...---)))))((.((((..(((((.....)))))..)))).))..........))).......... ( -30.30) >DroSec_CAF1 9645 108 + 1 GCUAUAUU--UUUAGCUAUUUU---U----CAUCUUCUCUUGUCCGUUGUAAGCCG---AGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGCAGAAAGAAACAGCAAAAAAGGGG .((...((--(((.(((.((((---(----(..((((((....(.(((((..(((.---.((..(.....)..)))))..))))).)...))))))..))))))...))).))))).)). ( -30.90) >DroSim_CAF1 9638 108 + 1 GCUAUAUU--UUUAGCUAUUUU---U----UAUCUUCUCUUGUCCGUUGUAAGCCG---AGCUGGCAUCUCUGGCGGCGCACAGCUGUUUGAGAAGCAGAAAGAAACAGCAAAAAAGGGG ((((....--..))))......---.----......(((((....(((((..(((.---....))).((((..(((((.....)))))..))))...........)))))....))))). ( -30.50) >DroEre_CAF1 17508 108 + 1 GCUAUAUU--UUUGGCUAUAUU---U----AAUAUACCUUUUGCUGUUAUAAGCCG---AAUUGGCAUCCCUAACGGCGCACAGCUGUUUGGGAAGCAGAAAGAAACAGUGAAAAAGGGG ((((....--..))))......---.----......((((((((((((....(((.---....))).((((.((((((.....)))))).))))..........))))))..)))))).. ( -34.40) >DroYak_CAF1 9943 110 + 1 GCUAUUUUUGUUUGGCUAUUUU---U----CAUAAACUUCUUGCUGUUAUAAGCCG---AAUUGGCAUCUCUAGGGGCGCACAGCUGUUUGGGAAACAGAGAGAAACAGCAAACAAGGGG ....((((((((((.((.((((---(----(.....(.....)(((((....(((.---....))).((((.((.(((.....))).)).))))))))).)))))).)))))))))))). ( -29.20) >DroAna_CAF1 10250 104 + 1 GCAAAAUU--UUUAAAAAAUACCGGAAAAAUACCAUACC-CUGACGUAAUAAGCCGCCAAGUUGGCAACUCUAAUUUGAAGCAGCUGUUG-----------AAAAAAAGCAG--AAAGGG ........--.............((.......))...((-((..(.......((...((((((((.....))))))))..)).(((.((.-----------...)).))).)--..)))) ( -16.70) >consensus GCUAUAUU__UUUAGCUAUUUU___U____UAUCUACUCUUGGCCGUUAUAAGCCG___AGCUGGCAUCUCUAGCGGCGCACAGCUGUUUGAGAAGCAGAAAGAAACAGCAAAAAAGGGG ((((........))))....................(((((.....((((..((((......)))).((((.((((((.....)))))).))))..............))))...))))) (-16.70 = -17.73 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:47 2006