Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,876,283 – 25,876,383 |
Length | 100 |
Max. P | 0.516633 |
Location | 25,876,283 – 25,876,383 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -17.40 |
Consensus MFE | -11.53 |
Energy contribution | -12.75 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.08 |
Mean z-score | -1.31 |
Structure conservation index | 0.66 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25876283 100 - 27905053 GUGAUUAUUAUUUAAUGACGACGCCGAGUCGCCGUAAACAUAUAAUAAAACCGAAAAGA-ACAAGCCAU-U--UUGAAACAACACACAAAAUGGCAAUACUCUC (((.(((((((...(((.((((.....)))).)))......)))))))...........-....(((((-(--(((..........)))))))))..))).... ( -20.20) >DroPse_CAF1 3245 100 - 1 GUGAUUAUUAUUUAAUGACGACGAGAAGUCGCCGUAAACAUAUAAUAAAACGAAACAAAAAUUCGCCAC-GCACCAUCG---CACAGACCCUGGCUAUACUCUU (((.(((((((...(((.((((.....)))).)))......)))))))..((((.......)))).)))-........(---(.(((...)))))......... ( -15.30) >DroEre_CAF1 3559 97 - 1 GUGAUUAUUAUUUAAUGACGACGAAGAGUCGCCGUAAACAUAUAAUAAAACCAAAAGGA-ACAAGCCAU-U--UUGACA---CACAGAAAGUGGCAAUACACUU (((.(((((((...(((.((((.....)))).)))......)))))))..((....)).-....(((((-(--((....---.....))))))))....))).. ( -20.30) >DroYak_CAF1 3491 96 - 1 GUGAUUAUUAUUUAAUGACGACGCCGAGUCGCCGUAAACAUAUAAUAAAACCAAAAGGA-ACCAGCCAU-U--CUGACA---CACAGAAAGUGGCAAUACUCU- ....(((((((...(((.((((.....)))).)))......)))))))..((....)).-....(((((-(--(((...---..))))..)))))........- ( -19.80) >DroAna_CAF1 3905 97 - 1 GUGAUUAUUAUUUAAUGACGACGAAAAGUCGCCGUAAACAUAUAAUAAAACCAAAAGAA-AU-AUUCAUCG--UUGACA---CUCAGAAGACGCCUAUACACUU (((.(((((((...(((.((((.....)))).)))......)))))))...........-..-......((--((..(.---....)..))))......))).. ( -12.30) >DroPer_CAF1 3238 100 - 1 GUGAUUAUUAUUUAAUGACGACGAGAAGUCGCCGUAAACAUAUAAUAAAACGAAACAAAAAUUCGCCAC-GCACCGUCG---CACAGACCCUGGCCAUACUCUU (((.(((((((...(((.((((.....)))).)))......)))))))..((((.......)))).)))-((...(((.---....)))....))......... ( -16.50) >consensus GUGAUUAUUAUUUAAUGACGACGAAAAGUCGCCGUAAACAUAUAAUAAAACCAAAAAAA_ACAAGCCAU_G__CUGACA___CACAGAAAAUGGCAAUACUCUU (((.(((((((...(((.((((.....)))).)))......)))))))................(((((....(((........)))...)))))..))).... (-11.53 = -12.75 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:46 2006