Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,869,102 – 25,869,202 |
Length | 100 |
Max. P | 0.874416 |
Location | 25,869,102 – 25,869,202 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -20.68 |
Consensus MFE | -16.24 |
Energy contribution | -16.68 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.79 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25869102 100 + 27905053 AUCAUUUUGCCAACUCUAUUAAAUUUCAUACACAAUUUAAAAGAUUGUAAACAAACGCCGCACGAAACGGAAUCGCUAAAAGGACCAUCGUCGGCGCAAU ......(((((((.(((.(((((((........))))))).)))))).........((((.((((...((..((........)))).)))))))))))). ( -19.40) >DroSec_CAF1 20348 100 + 1 AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAACGCCGCCCGAAACGGAAUCGCUAAAAGGACCACCGUCGGCGCAAU ......((((((((.((.(((((((........))))))).)))))).........((((......((((..((........))...)))))))))))). ( -19.20) >DroSim_CAF1 21203 100 + 1 AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAACGCCGCCCGAAACGGAAUCGCUAAAAGGACCACCGUCGGCGCAAU ......((((((((.((.(((((((........))))))).)))))).........((((......((((..((........))...)))))))))))). ( -19.20) >DroEre_CAF1 21318 100 + 1 AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAAAGCCGCCGGACCCGGAAUCGCUGUAAGGACAACCGUCGGCGCAAU ........(((.((....(((((((........)))))))..((((((.......(((..(((....)))....)))......)))))))).)))..... ( -24.22) >DroYak_CAF1 15919 100 + 1 AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAAAGCCGCUAUACCCGGAAUCGGCACUAGGACAACCGUCGGCGCAAU ......((((((((.((.(((((((........))))))).)))))).........(((.(((...(((....)))...)))(((....)))))))))). ( -21.40) >consensus AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAACGCCGCCCGAAACGGAAUCGCUAAAAGGACCACCGUCGGCGCAAU ......((((((((.((.(((((((........))))))).)))))).........((((......((((..((........))...)))))))))))). (-16.24 = -16.68 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:44 2006