Locus 9763

Sequence ID 3R_DroMel_CAF1
Location 25,856,689 – 25,856,795
Length 106
Max. P 0.523331
window15597

overview

Window 7

Location 25,856,689 – 25,856,795
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.41
Mean single sequence MFE -25.45
Consensus MFE -15.34
Energy contribution -15.95
Covariance contribution 0.61
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.60
SVM decision value -0.02
SVM RNA-class probability 0.523331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25856689 106 - 27905053
G--UACAAUGAUUCCA------CU-GGUCUAA--GCACCUUUUUAACACGGCUCUCUUCUCCGGGUACUGGUGGUCGUGGGCCACUACACUCAUUAUCAUCAUGUUUCCG---GAUUCCC
.--.............------..-(((....--..)))....................((((((.(((((((((.(((((........))))).))))))).)).))))---))..... ( -24.20)
>DroVir_CAF1 12733 108 - 1
UUGUCUA----GUAUA----UGGUUUUGCUUC-AUUACCUUUUUAACACGGCUCUCUUCUCCGGGUACAGGUGGUCGUGGCCCACUACACUCAUUAUCACCAUGUUUCCG---GAGUCCC
..(((..----.((..----.(((..((...)-)..)))....))....)))......(((((((.(((((((((.((((..........)))).)))))).))).))))---))).... ( -27.40)
>DroPse_CAF1 21 105 - 1
G--AGUGGG--GCUCC------CC-GAU--GC--UUACCUUUUUAACACGGCUCUCUUCUCCGGGUACAGGUGGUCGUGGUCCACUACACUCAUUAUCAUCAUGUUUCCGGUGGAUGCCC
(--((((((--....)------))-...--))--)).............(((..(((...(((((.(((((((((.(((((.......)).))).)))))).))).))))).))).))). ( -31.10)
>DroGri_CAF1 12130 102 - 1
AUUUGGA----UUUCA------UUUUAAU-----UUACCUUUUUAACUCGGCUCUCUUCUCCGGGUACAGGUGGUCGUGGCCCACUACACUCAUUAUCAUCAUGUUUCCG---GAGUCCC
....(((----.....------.......-----...((..........)).......(((((((.(((((((((.((((..........)))).)))))).))).))))---)))))). ( -22.80)
>DroMoj_CAF1 16566 111 - 1
AUUACUA----AUACAAUAACUAUUUAGUUUC--GUACCUUUUUAACUCGGCUCUCUUCUCCGGGUACAGGUGGUCGUGGCCCACUACACUCAUUAUCACCAUGUUUCCG---GAGUCCC
.......----.(((...((((....))))..--))).....................(((((((.(((((((((.((((..........)))).)))))).))).))))---))).... ( -25.70)
>DroAna_CAF1 8026 101 - 1
A--UAUA-------AA------UC-GAUAUAGUACUACCUUUUUAACACGGCUCUCUUCUCCGGGUACUGGUGGUCGUGGCCCACUACACUCAUUAUCAUCAUGUUUCCG---GAGUCCC
.--....-------..------..-.................................(((((((.(((((((((.((((..........)))).))))))).)).))))---))).... ( -21.50)
>consensus
A__UAUA____GUACA______CU_GAUCUAC__UUACCUUUUUAACACGGCUCUCUUCUCCGGGUACAGGUGGUCGUGGCCCACUACACUCAUUAUCAUCAUGUUUCCG___GAGUCCC
.................................................(((((.......((((.(((((((((.((((..........)))).)))))).))).))))...))))).. (-15.34 = -15.95 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:39 2006