Locus 9761

Sequence ID 3R_DroMel_CAF1
Location 25,854,787 – 25,854,877
Length 90
Max. P 0.877198
window15595

overview

Window 5

Location 25,854,787 – 25,854,877
Length 90
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 80.20
Mean single sequence MFE -25.08
Consensus MFE -16.66
Energy contribution -17.42
Covariance contribution 0.76
Combinations/Pair 1.07
Mean z-score -2.02
Structure conservation index 0.66
SVM decision value 0.90
SVM RNA-class probability 0.877198
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25854787 90 - 27905053
CAGCGCCAAACAGCAGGGGAAAUCGGCACCUCUUUGGUGCAUCAUUUC------GCCAUCUCACCAACCU-GGCAUCCUUUUGCAUCCGUUGCAUCC
(((((.....(((.(((((((((..(((((.....)))))...)))))------((((...........)-))).)))).)))....)))))..... ( -26.00)
>DroSec_CAF1 6031 82 - 1
CAGCGCCAAACAGCAGGGGAAAUCGGCACCUCUUUGGUGCAUCAUCUC------GCCAUC--------GU-GGCAUCCUUUUGCAUCCGUUGCAUCC
............((((.(((.....(((((.....)))))........------(((...--------..-)))...........))).)))).... ( -24.70)
>DroSim_CAF1 6133 82 - 1
CAGCGCCAAACAGCAGGGGAAAUCGGCACCUCUUUGGUGCAUCAUCUC------GCCAUC--------GU-GGCAUCCUUUUGCAUCCGUUGCAUCC
............((((.(((.....(((((.....)))))........------(((...--------..-)))...........))).)))).... ( -24.70)
>DroEre_CAF1 6715 90 - 1
CAGCGCCAAACAGCAGGGGAAAUCGGCACCUCUUUGCUGCAUCAUCUC------CCCAUGCCGCCAUCAUUUGCAUCA-GAUGCAUCUUUUGCAUCC
..(((.......((((((((.(((((((......)))))....)).))------))).))))))..............-((((((.....)))))). ( -25.01)
>DroYak_CAF1 1391 87 - 1
CAGCGCCAAACAGCAGGGGAAAUCGGCACCUCUUUGGUGCAUCAUCUUGCAUUUCGCAUUUCGCCAUCCU-GGCAUC---------CUUUUGCAUCC
..((((.(((..((((((.......(((((.....)))))....)))))).))).)).....(((.....-)))...---------.....)).... ( -25.00)
>consensus
CAGCGCCAAACAGCAGGGGAAAUCGGCACCUCUUUGGUGCAUCAUCUC______GCCAUC_C_CCA_CCU_GGCAUCCUUUUGCAUCCGUUGCAUCC
............((((.(((.....(((((.....)))))................................(((......))).))).)))).... (-16.66 = -17.42 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:37 2006