| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,852,083 – 25,852,219 |
| Length | 136 |
| Max. P | 0.945988 |
| Location | 25,852,083 – 25,852,182 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -39.53 |
| Consensus MFE | -33.10 |
| Energy contribution | -33.80 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25852083 99 + 27905053 AACGGGCGGGCGUCUGGUCCUUCCUUUGCCUUGCCACUCUGGCAGUGGGCCAGGAUUUGGUCUGGGCUUGGGCAGCAGGGCAUAGAAUGGGGGGACCAG .(((......)))(((((((((((..((((((((..(((.(((..((((((((...)))))))).))).)))..))))))))......))))))))))) ( -47.80) >DroSec_CAF1 3306 99 + 1 AACGGGCGGGCAUCUGGUCCUUCCUUUGCCUUGGCACUCUGGCAGUGGGCCAGGAUUUGGUCUGGGCUUAGGCAGCAGGGUAUAGAAUGGGGGGACCAG .............(((((((((((...((....))((((((((..((((((.((((...)))).)))))).))..)))))).......))))))))))) ( -40.30) >DroSim_CAF1 3390 76 + 1 AACGGGCGGGCGUCUGGUCCUUCCUUUGCCUUGGCACUCU-----------------------GGGCUUAGGCAGCAGGGCAUAGAAUGGGGGGACCAG .(((......)))(((((((((((..(((....)))((((-----------------------(.((....))..)))))........))))))))))) ( -30.50) >consensus AACGGGCGGGCGUCUGGUCCUUCCUUUGCCUUGGCACUCUGGCAGUGGGCCAGGAUUUGGUCUGGGCUUAGGCAGCAGGGCAUAGAAUGGGGGGACCAG .............(((((((((((..(((((((.(...(((((.....)))))............((....)).))))))))......))))))))))) (-33.10 = -33.80 + 0.70)
| Location | 25,852,122 – 25,852,219 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.72 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -16.46 |
| Energy contribution | -16.46 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25852122 97 + 27905053 UGGCAGUGGGCCAGGAUUUGGUCUGGGCUUGGGCAGCAGGGCA----------------UAGAAU----GGGGGGACCAGGGUCUGGGGACUCAAUCUGGACCUGCGCAUAUUGGUU ..((...((.(((((......))))).))...)).(((((...----------------((((..----.((....)).(((((....)))))..))))..)))))........... ( -36.90) >DroSec_CAF1 3345 97 + 1 UGGCAGUGGGCCAGGAUUUGGUCUGGGCUUAGGCAGCAGGGUA----------------UAGAAU----GGGGGGACCAGGGUCUGGGGACUCAAUCUGGACCUGCGCAUAUUGGUU ..((..((((((.((((...)))).)))))).)).(((((...----------------((((..----.((....)).(((((....)))))..))))..)))))........... ( -37.00) >DroSim_CAF1 3429 74 + 1 U-----------------------GGGCUUAGGCAGCAGGGCA----------------UAGAAU----GGGGGGACCAGGGUCUGGGGACUCAAUCUGGACCUGCGCAUAUUGGUU .-----------------------.((((...((.(((((...----------------((((..----.((....)).(((((....)))))..))))..))))))).....)))) ( -27.50) >DroEre_CAF1 3920 113 + 1 ----AGUGGGCCAGCACUUGGUCUGGGCUUAGGCAGCAGGCAGCUGGGAGCUGGGAGCAGGGAGCAGUAGCAGGGAAUGGGGUCUGAGGACUCAAUCUGGACCUGCGCAUAUUGGUU ----....(((((((.((((.(((.(((((...((((.....)))).))))).))).))))..)).((.(((((.....(((((....)))))........)))))))....))))) ( -44.72) >DroAna_CAF1 2475 77 + 1 ------------------GAGGAGGGGGUAUGGGAGCAGGAUA----------------UGGACC----GAAG--UUUGCGGACUGAGGACUGGGUCUGGACCUGCGCAUAUUGGUU ------------------........((((((...(((((...----------------((((((----..((--((..(.....)..)))).))))))..))))).)))))).... ( -23.90) >consensus U___AGUGGGCCAG_A_UUGGUCUGGGCUUAGGCAGCAGGGCA________________UAGAAU____GGGGGGACCAGGGUCUGGGGACUCAAUCUGGACCUGCGCAUAUUGGUU ................................((.(((((..............................((....)).(((((....)))))........)))))))......... (-16.46 = -16.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:37 2006