Locus 9758

Sequence ID 3R_DroMel_CAF1
Location 25,848,535 – 25,848,655
Length 120
Max. P 0.985159
window15589

overview

Window 9

Location 25,848,535 – 25,848,655
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -39.80
Consensus MFE -39.02
Energy contribution -39.13
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.75
Structure conservation index 0.98
SVM decision value 2.00
SVM RNA-class probability 0.985159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25848535 120 - 27905053
UGAAUGGCAAAACAAAAUGUAGUUCGACACAAAUGUUAGACGGCGAGACGAACGAUUACAUGCUAGAGUUGCGUGGUUCGAAAUCGAACUGGUUCGAUAGCUCGCCUCGGGGAUGCCAAC
....(((((............(((..(((....)))..)))((((((.(((((.....(((((.......)))))(((((....)))))..)))))....)))))).......))))).. ( -41.90)
>DroSec_CAF1 3312 120 - 1
UGAAUGGCAAAACAAAAUGUAGUUCGACACAAAUGUUAGACGGCGAGACGAACGAUUACAUGCUAGAGUUGCGUGGUUCGAAAUCGAACUGGUUCGAUAGCUCGCCUCGGGGAUGCCAAC
....(((((............(((..(((....)))..)))((((((.(((((.....(((((.......)))))(((((....)))))..)))))....)))))).......))))).. ( -41.90)
>DroYak_CAF1 1162 120 - 1
UGAAUGGCAAAACAAAAUGUAGUUCGACACAAAUGUUAGACGGCGAGACGAACGAUUACAUGCUAGAGUUGCGUGGUUCGAAAUCGAACUGGUUCGAUAACUGGCUGCGGGACUGCCAAC
....((((...((.....))(((((((((....)))).(.((((.((.(((((.....(((((.......)))))(((((....)))))..)))))....)).))))).))))))))).. ( -35.60)
>consensus
UGAAUGGCAAAACAAAAUGUAGUUCGACACAAAUGUUAGACGGCGAGACGAACGAUUACAUGCUAGAGUUGCGUGGUUCGAAAUCGAACUGGUUCGAUAGCUCGCCUCGGGGAUGCCAAC
....(((((............(((..(((....)))..)))((((((.(((((.....(((((.......)))))(((((....)))))..)))))....)))))).......))))).. (-39.02 = -39.13 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:32 2006