Locus 9754

Sequence ID 3R_DroMel_CAF1
Location 25,833,731 – 25,833,851
Length 120
Max. P 0.665250
window15578

overview

Window 8

Location 25,833,731 – 25,833,851
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -49.88
Consensus MFE -31.34
Energy contribution -31.18
Covariance contribution -0.16
Combinations/Pair 1.38
Mean z-score -1.78
Structure conservation index 0.63
SVM decision value 0.28
SVM RNA-class probability 0.665250
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25833731 120 - 27905053
CGAUUGGCUGCCCAAGUACCAGUUGAACUUCCUGGCCAUGGAUGUGGUGGCGGGUCUCACCGUGGGCCUCACAGCCGUGCCACAGGCCAUAGCCUACGGAGCUGUGGCCAAUCUGCCACC
(((((((.(((....)))))))))).((.(((.......))).))((((((((((......((((....(((....))))))).((((((((((....).))))))))).)))))))))) ( -54.20)
>DroPse_CAF1 5381 120 - 1
AGAUUGGCUGCCGAAGUACCAGCUGAACUUUCUUCCGAUGGACAUUGUGGCGGGUCUGACGGUGGGCCUCACGGCUGUGCCGCAGGCCAUAGCCUAUGGGGUGGUGGCCGAUCUGCCCCC
((((((((..(((.....(((.(.(((.....))).).))).(((...(((.((((((.(((((((((....)))).)))))))))))...))).)))...)))..))))))))...... ( -53.10)
>DroEre_CAF1 5727 120 - 1
CGAUUGGCUGCCCAAGUACCAGUUGAGCUUCCUGGCCAUGGAUGUGGUGGCGGGUCUCACUGUGGGCCUCACAGCCGUACCACAGGCCAUUGCCUAUGGAGCUGUGGCCAAUCUGCCGCC
(((((((.(((....))))))))))((((((..(((.((((.(((((((((((((((......))))))....)))..))))))..)))).)))...))))))(((((......))))). ( -52.90)
>DroWil_CAF1 5493 120 - 1
CGGAUGGUUGCCCAAAUAUCAAUUGAAAUAUCUUCUAAUGGACUUCGUGGCCGGAUUGACUGUAGGCCUGACAGCCAUACCCCAAGCCAUAGCCUACGGAGCUGUGGCGAAUCUCCCACC
.(((((((((........(((...(((.....)))...)))...(((.((((............)))))))))))))).))....(((((((((....).))))))))............ ( -36.00)
>DroAna_CAF1 7868 120 - 1
CGACUGGCUGCCCAAAUACCAGUGGAGCUUCCUGCCCAUGGACCUGGUCGCGGGUCUCACCGUCGGCCUCACAGCCGUACCCCAGGCCAUUGCCUACGGAGCGGUGGCCAACCUCCCCAC
.....(((((........(((.(((.((.....))))))))....((((((((......))).)))))...)))))........((((((((((....).)))))))))........... ( -50.00)
>DroPer_CAF1 5388 120 - 1
AGAUUGGCUGCCGAAGUACCAGCUGAACUUUCUUCCGAUGGACAUUGUGGCGGGUCUGACGGUGGGCCUCACGGCUGUGCCGCAGGCCAUAGCCUAUGGGGUGGUGGCCGAUCUGCCCCC
((((((((..(((.....(((.(.(((.....))).).))).(((...(((.((((((.(((((((((....)))).)))))))))))...))).)))...)))..))))))))...... ( -53.10)
>consensus
CGAUUGGCUGCCCAAGUACCAGUUGAACUUCCUGCCCAUGGACAUGGUGGCGGGUCUCACCGUGGGCCUCACAGCCGUACCACAGGCCAUAGCCUACGGAGCGGUGGCCAAUCUGCCCCC
.(((((((..(......(((.((((....(((.......))).....)))).)))....((((((((......(((........)))....))))))))....)..)))))))....... (-31.34 = -31.18 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:23 2006