Locus 9753

Sequence ID 3R_DroMel_CAF1
Location 25,828,363 – 25,828,483
Length 120
Max. P 0.727183
window15577

overview

Window 7

Location 25,828,363 – 25,828,483
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -53.18
Consensus MFE -32.58
Energy contribution -31.92
Covariance contribution -0.66
Combinations/Pair 1.37
Mean z-score -3.09
Structure conservation index 0.61
SVM decision value 0.41
SVM RNA-class probability 0.727183
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25828363 120 + 27905053
GGAGCCAUGUGCAGCGACAAGAAUUCACCGUGCUGCCAGAACUGUCAGUUCAUGGCCUCCGGAAUGAAGUGCCGCGAGGCGCAGUACGCCACCUGCGAGCAGGAGGCUCGCUGUACCGGC
...(((..(((((((((............(((((((((((((.....)))).))((((((((.........))).))))))))))))(((.((((....)))).)))))))))))).))) ( -58.80)
>DroVir_CAF1 198 120 + 1
GGCGCCAUGUGCAGCGACAAGAAUUCGCCGUGCUGCCAGAACUGCCAGUUCAUGCCGGCGGCAAUGAAGUGCCGCGAAGCGCAGUAUGCCACCUGUGAGCAGGAGGCGCGCUGCACGGGC
...(((.(((((((((.(...........(((((((..((((.....))))..((..((((((......))))))...)))))))))(((.((((....)))).)))))))))))))))) ( -58.80)
>DroGri_CAF1 198 120 + 1
GGCGCCAUGUGCAGCGACAAAAAUUCACCGUGCUGUCAGAACUGUCAGUUUAUGCCGGCGGCGAUGAAGUGCCGAGAGGCACAAUAUGCCACCUGUGAGCAGGAGGCACGCUGCACUGGC
...((((.((((((((.......((((.(((((((.((((((.....)))).)).)))).))).))))(((((....)))))....((((.((((....)))).)))))))))))))))) ( -59.30)
>DroWil_CAF1 201 120 + 1
GGCGCCAUGUGUAGUGAUAAGAAUUCGCCCUGCUGCCAGAAUUGUCAAUUCAUGGCAUCGGGAAUGAAGUGUCGAGAGGCACAAUAUGCAACCUGCGAACAGGAGGCCCGUUGUACCGGA
((.(((.((((((((((.......))))((((.(((((((((.....)))).))))).))))......(((((....)))))..)))))).((((....)))).)))))........... ( -43.00)
>DroMoj_CAF1 198 120 + 1
GGCGCCAUGUGCAGCGACAAGAACUCGCCCUGCUGUCAAAAUUGCCAAUUUAUGCCAGCGGGCAUGAAAUGUCGCGAAGCUCAAUACGCCACCUGUGAGCAGGAGGCACGCUGCACCGGC
...(((..((((((((....((.((((((((((((.((((((.....)))).)).)))))))...((....))))).)).)).....(((.((((....)))).))).)))))))).))) ( -48.40)
>DroAna_CAF1 198 120 + 1
GGAGCCAUGUGCAGCGACAAAAACUCGCCCUGUUGCCAGAACUGCCAGUUCAUGGCGUCGGGGAUGAAGUGCCGUGAAGCUCAAUACGCCACUUGUGAGCAGGAGGCCCGUUGCACAGGU
...(((.(((((((((.((...((((((((((.(((((((((.....)))).))))).))))).)).)))....))...........(((.((((....)))).))).)))))))))))) ( -50.80)
>consensus
GGCGCCAUGUGCAGCGACAAGAAUUCGCCCUGCUGCCAGAACUGCCAGUUCAUGCCGGCGGGAAUGAAGUGCCGCGAAGCACAAUACGCCACCUGUGAGCAGGAGGCACGCUGCACCGGC
...(((..((((((((.......(((((((.(.((.((((((.....)))).)).)).))))..))))((((......)))).....(((.((((....)))).))).)))))))).))) (-32.58 = -31.92 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:22 2006