Locus 9750

Sequence ID 3R_DroMel_CAF1
Location 25,811,841 – 25,811,958
Length 117
Max. P 0.823834
window15573

overview

Window 3

Location 25,811,841 – 25,811,958
Length 117
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -26.97
Consensus MFE -16.70
Energy contribution -17.54
Covariance contribution 0.84
Combinations/Pair 1.05
Mean z-score -1.96
Structure conservation index 0.62
SVM decision value 0.69
SVM RNA-class probability 0.823834
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25811841 117 + 27905053
GAGAUCGG-GGAUUUCGACACUCUUCGAUGAUUUCACAGGCACAAUAAAUGCCCCCAAAUGGAGGUCAAUUAGAUCUUAUUUCUUACCGAUUUGACUCAUAUGUAUAUGCUGUCGAAA
.(((((((-((...((((......))))..........((((.......)))).)).....((((((.....))))))........)))))))(((.((((....))))..))).... ( -26.20)
>DroSec_CAF1 55049 101 + 1
GAGAUCGG-GGAUUUCGACACUCUCCGAUGAUCUCACAGGCACAAUAAAUGCCUCCAAAUGGAGGUCAAUCAGAUCUUAUUUCUUAACGAUUUGACACAUAU----------------
((((((((-(((.........)))))))...))))...............((((((....))))))...((((((((((.....))).))))))).......---------------- ( -28.20)
>DroSim_CAF1 53734 97 + 1
GAGAUCGG-CGAUUUCGACACUCUUCGAUGAUCUCAC----ACAAUAAAUGCCUCCAAAUGGAGGUCAAUCAGAUCUUAUUUCUUACCGAUUUGACACAUAU----------------
(((((((.-(((............))).)))))))..----.........((((((....))))))...(((((((............))))))).......---------------- ( -26.10)
>DroEre_CAF1 56640 96 + 1
AAGAUGGG-GGAUUUCGACACUAUUCGAUGAUCUCACUAGCACAUUAAAUGCCUCCACGUGGAGGUCAACCAGCUCGUAUUUCUUACCAAUUUUACA---------------------
....((((-(((((((((......)))).))))))((.(((.........((((((....))))))......))).))........)))........--------------------- ( -23.86)
>DroYak_CAF1 55861 114 + 1
GAGAUGGGGGGAUUUCGACACUUUUCGAUGAUCUCACGGGUACAAUAAACGCCUCCAAAUGGAGGUCAAUCAGAUCUUGUUUCUUACCGAUUUGACACAUUU----AAGCUGUCGGAA
((((..((((((((((((......)))).))))))...............((((((....)))))).........))..)))).......((((((((....----..).))))))). ( -30.50)
>consensus
GAGAUCGG_GGAUUUCGACACUCUUCGAUGAUCUCACAGGCACAAUAAAUGCCUCCAAAUGGAGGUCAAUCAGAUCUUAUUUCUUACCGAUUUGACACAUAU________________
.(((((((..((((((((......)))).)))).................((((((....))))))....................)))))))......................... (-16.70 = -17.54 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:18 2006