Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,805,420 – 25,805,536 |
Length | 116 |
Max. P | 0.562867 |
Location | 25,805,420 – 25,805,536 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 56.48 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -5.67 |
Energy contribution | -5.67 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.94 |
Structure conservation index | 0.26 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25805420 116 + 27905053 CUGUCCAAGAUAAAGAGUUGGACUAAUACCUUUUUAUCAUUUAUUAAGUGCAUGGCAUUUGGCUUUACAGAAGCCCUUGGAUUCGUCCAACCAUUCAGUAACUUUUUAUUAAUCAU ........(((((((((((((((.(((.((...............((((((...))))))((((((...))))))...))))).)))).((......)))))))))))))...... ( -24.90) >DroSim_CAF1 47250 96 + 1 CUGUCGAAUAAAAGGGCAUAAACUAAUGCCCUUUUAUCAUUUAUUAAAAGCAUGGCAUUUGGCUUAACAGAAGCCCU------------------CACUAACU--UUAUUAGUUAU .....((.(((((((((((......)))))))))))))...............(((.((((......)))).)))..------------------...(((((--.....))))). ( -25.40) >DroYak_CAF1 49136 92 + 1 -----CAA----AUG-AUUGAAUUAAUACUUUUUUAUCGACCUUUA----------AUUGGGCUUCUCAGAAGCCCUUG-AUGCUUUUUACUAUUC---ACUUAUUAAUCACUUAU -----..(----(((-(.(((((...........((((((......----------...(((((((...))))))))))-))).........))))---).))))).......... ( -16.25) >consensus CUGUCCAA_A_AAAG_AUUGAACUAAUACCUUUUUAUCAUUUAUUAA__GCAUGGCAUUUGGCUUAACAGAAGCCCUUG_AU_C_U___AC_AUUCA_UAACU_UUUAUUAAUUAU ............................................................(((((.....)))))......................................... ( -5.67 = -5.67 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:17 2006