Locus 9748

Sequence ID 3R_DroMel_CAF1
Location 25,797,547 – 25,797,640
Length 93
Max. P 0.867410
window15571

overview

Window 1

Location 25,797,547 – 25,797,640
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 93.18
Mean single sequence MFE -33.40
Consensus MFE -27.15
Energy contribution -27.40
Covariance contribution 0.25
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.81
SVM decision value 0.85
SVM RNA-class probability 0.867410
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25797547 93 - 27905053
CAUAGCUGGCGCCAAAUCCAAUUUGAAAGGCUUCUGUCUGUGCUGGCCAUUUCGGUGGUCAGCACGGCCAUCGCUAAUUGCCGCGAAACACUC
....((.(((..(((((...)))))...(((...((.(((((((((((((....))))))))))))).))..)))....)))))......... ( -33.80)
>DroSec_CAF1 40847 91 - 1
CAUAGCUGGCGCAAAAUCCAAUUUGAAAGGCUCCUGU--GUGCUGGCCAUUUCGGUGGUCAGCACGGCCAUCGCUAAUUGCCGGGAAGCACUC
.....(((((.((((......))))...((((.....--(((((((((((....)))))))))))))))..........)))))......... ( -32.80)
>DroEre_CAF1 42387 91 - 1
CAUUGCUGGCGGAAAAUCCAAUUUGAAAGCCUCCUG--UGUGCUGGCCAUUUCGGUGGUCAGCACGGCCAUCGCUAAUUGCCGCGAAACACUC
..((((.(((((.....)).....((..(((.....--.(((((((((((....))))))))))))))..)).......)))))))....... ( -33.10)
>DroYak_CAF1 41199 92 - 1
CAUAGCUGGCGGAAAAUCCAAUUUGAAGG-CUCCUGUGUGUGCUGGCCAUUUCGGUGGUCAGCACGGCCAUCGCUAAUUGCCGCGAAACACUC
....((.(((((.....)).....((.((-((.......(((((((((((....))))))))))))))).)).......)))))......... ( -33.91)
>consensus
CAUAGCUGGCGCAAAAUCCAAUUUGAAAGGCUCCUGU_UGUGCUGGCCAUUUCGGUGGUCAGCACGGCCAUCGCUAAUUGCCGCGAAACACUC
......((((((....((......))...))........(((((((((((....))))))))))).))))((((........))))....... (-27.15 = -27.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:16 2006