Locus 9746

Sequence ID 3R_DroMel_CAF1
Location 25,792,531 – 25,792,636
Length 105
Max. P 0.538753
window15568

overview

Window 8

Location 25,792,531 – 25,792,636
Length 105
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 88.22
Mean single sequence MFE -26.44
Consensus MFE -17.46
Energy contribution -17.70
Covariance contribution 0.24
Combinations/Pair 1.16
Mean z-score -2.16
Structure conservation index 0.66
SVM decision value 0.01
SVM RNA-class probability 0.538753
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25792531 105 + 27905053
CACAAGUGUUAUUUGCAUAUUGUUAUGUGCAACAUUUUAUAUUAGACACACAAAGUUGUUCAAUGCCAAUAAAUUGGACAAUUGUCUUGU----GGACACAUGU----GCUGG
((((.(((((..((((((((....))))))))..............((((...(((((((((((........)))))))))))....)))----)))))).)))----).... ( -32.00)
>DroSec_CAF1 35949 103 + 1
C--AAGUGAUAUUUGCAUAUUGUUAUGUGCAACAUUUUAUAUUAGACACACAAAGUUGUUCAAUGCCAAUAAAUUGGACAAUUGUCUUGC----GGACACAUGU----GGUGG
.--..((((.((((((((((....)))))))).)).)))).....((.((((.(((((((((((........)))))))))))(((....----.)))...)))----))).. ( -25.70)
>DroSim_CAF1 36314 103 + 1
C--AAGUGAUAUUUGCAUAUUGUUAUGUGCAACAUUUUAUAUUAGACACACAAAGUUGUUCAAUGCCAAUAAAUUGGACAAUUGUCUUGC----GGACACAUGU----GGUGG
.--..((((.((((((((((....)))))))).)).)))).....((.((((.(((((((((((........)))))))))))(((....----.)))...)))----))).. ( -25.70)
>DroEre_CAF1 37463 107 + 1
C--AAUUCCUAUUUGCAUAUUGUUAUGUGCAACAUUUCACAUAAGACAGACAAAGUUGUUCAAUGCCAAUAAAUUAGACAAUUGUGCUGUGCGUGGAUACAUGU----GGUGG
.--.........((((((((....)))))))).....(((.....((((.((.((((((..(((........)))..)))))).))))))(((((....)))))----.))). ( -26.80)
>DroYak_CAF1 35632 106 + 1
C--AAGUGUUAUUUGCAUAU-GUUAUAGGCAACAUUUUAUAUAAGACAGACAAAAUUGUUCAAUGCCAAUAAAUUAGACAAUUGUGCUGU----GGAUACAUGUGGGUGGUGG
.--.....(((((..(((.(-(((...(....)............((((.((.((((((..(((........)))..)))))).))))))----.)))).)))..)))))... ( -22.00)
>consensus
C__AAGUGAUAUUUGCAUAUUGUUAUGUGCAACAUUUUAUAUUAGACACACAAAGUUGUUCAAUGCCAAUAAAUUGGACAAUUGUCUUGU____GGACACAUGU____GGUGG
............((((((((....))))))))((((..((((...........(((((((((((........)))))))))))((((.......))))..))))....)))). (-17.46 = -17.70 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:14 2006