| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,785,117 – 25,785,212 |
| Length | 95 |
| Max. P | 0.740237 |
| Location | 25,785,117 – 25,785,212 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 76.68 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -14.11 |
| Energy contribution | -13.04 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25785117 95 + 27905053 AAUGGGUGCUCUUAGCUUAAAAGA-UAUGUGCACUGGGAGAAAAACUCAAGAGAAUUAUUUAGGAAAACAAAAA----G-UGAUUCCACAUACUAGUUUGA ..(((((.(((((((.........-........)))))))....))))).(.(((((((((...........))----)-))))))).............. ( -15.83) >DroSec_CAF1 28777 99 + 1 AAUGGGUGCUCUCAGCUUAAAAGA-UGUGUGCACUGAGAGAAAAACCCAAGGGAAUUAAUUAGGAAAACAAAAAAAGUG-UGAUUGCACAUCUUAGUUUGU ..(((((.(((((((.........-........)))))))....)))))..................(((((..(((((-((....)))).)))..))))) ( -24.83) >DroSim_CAF1 28949 99 + 1 AAUGGGUGCUCUUAGCUUAAAAGA-UAUGUGCACUGGGAGAAAAACCCAAGGGAAUUAAUUAGGAAAACAAAAAAAGUG-UGAUUGCACUUCUUAGUUUGU ..(((((.(((((((.........-........)))))))....)))))........((((((((..........((((-(....)))))))))))))... ( -21.13) >DroYak_CAF1 27867 78 + 1 AAUGGGUGCUUUCAGCUCAAAAGAAUAUGUGCACUGGGAGAAAAGCUCAAGGGAAUUAA--------------------GUAAGUAAACUUCUUA---CGA ..(((((.((..((((.((........)).))..))..))....)))))..........--------------------(((((.......))))---).. ( -15.90) >consensus AAUGGGUGCUCUCAGCUUAAAAGA_UAUGUGCACUGGGAGAAAAACCCAAGGGAAUUAAUUAGGAAAACAAAAA____G_UGAUUGCACAUCUUAGUUUGA ..(((((.(((((((..................)))))))....))))).................................................... (-14.11 = -13.04 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:11 2006