| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,778,629 – 25,778,745 |
| Length | 116 |
| Max. P | 0.867410 |
| Location | 25,778,629 – 25,778,745 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -33.74 |
| Consensus MFE | -27.68 |
| Energy contribution | -28.56 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25778629 116 - 27905053 GCCACUGCCUCGCACUUUGAAUAUAGUUUGUGGACACAUGACAGCAUGAUUCCGGAAAACUGUCGUACAGCUGCGGCUAAAAUAAAAGCACGCAAGUUGACAUCCAUUGGUGGCAA ((((((................(((((((.((((..((((....))))..))))..))))))).((.(((((((((((........))).))).))))))).......)))))).. ( -36.40) >DroSec_CAF1 22237 116 - 1 GCCACUGCCUCGCACUUUGAAUAUAGUUUGUGGACACAUGACAGCAUGAUUCUGGAAAACUGUCGUACAGCUGCGGCUGAAAUAAAAGCACGCAAGUUGACAUCCAUUUGAGGCAA .....((((((..(((........)))..(((((...(((((((...............))))))).(((((((((((........))).))).)))))...)))))..)))))). ( -34.96) >DroSim_CAF1 22391 116 - 1 GCCACUGCCUCGCACUUUGAAUAUAGUUUGUGGACACAUGACAGCAUGAUUCCGGAAAACUGUCGUACAGCUGCGGCUGAAAUAAAAGUACGCAAGUUGACAUCCAUUUGAGGCAA .....((((((...........(((((((.((((..((((....))))..))))..))))))).((.(((((((((((........))).))).)))))))........)))))). ( -34.80) >DroEre_CAF1 23604 116 - 1 GCCACUGCCUCGCACUUUGAAUAUAGUUUGUGAGCACAUGACAGCAUGAUUCCGGAAAACUGUCGUACAGCUGCGGCUGAAAUAAAAGCAGGCAACUUGACAUCCAUUUGCGGCAA (((.((((((((((..(((....)))..))))))...(((((((...............))))))).((((....))))........))))((((..((.....)).))))))).. ( -31.76) >DroYak_CAF1 21110 116 - 1 GCCACUGCCUCGCACUUUGAAUAUAGUUUGCGAGCACAUGACAGCAUGAUUCCGGAAAACUGUCGUACAGCUGCGGCUGAAAGAAAAGCACGCAACUUGACAUCUAUUUAAGGCAA (((.(((.((((((..(((....)))..))))))..((((....))))....))).....(((((...((.(((((((........))).)))).))))))).........))).. ( -30.80) >consensus GCCACUGCCUCGCACUUUGAAUAUAGUUUGUGGACACAUGACAGCAUGAUUCCGGAAAACUGUCGUACAGCUGCGGCUGAAAUAAAAGCACGCAAGUUGACAUCCAUUUGAGGCAA .....((((((...........(((((((.((((..((((....))))..))))..))))))).((.(((((((((((........))).))).)))))))........)))))). (-27.68 = -28.56 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:10 2006