| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,778,458 – 25,778,561 |
| Length | 103 |
| Max. P | 0.633761 |
| Location | 25,778,458 – 25,778,561 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.73 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -10.83 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25778458 103 + 27905053 CGGAUAUAUAUAUAUG-AUAUAUGUAG-----CGUUUCAACACUAACAGGUUGGGGCACAAGAAUAGUUCCACAAAAGUGGC---------ACUAUGAUCUCUCUCAGUCU-UGGCACC .((.(((((((((...-)))))))))(-----(((..((((........))))..)).((((((((((.((((....)))).---------)))))((......))..)))-)))).)) ( -29.80) >DroSec_CAF1 22065 105 + 1 CGCAUAUAUGUA--------UAUGUAG-----CGUUUCAACACCAACAGGUUGGGGCACAAGAAUAGUGCCACAAAAGUAACUGGCUUCUGUCUACGAUCUCCCUGAGUCU-UGGCACC .((((((....)--------))))).(-----.((..((((........))))..)).).......((((((((.((((.....)))).)))....((.(((...))))).-.))))). ( -26.00) >DroSim_CAF1 22214 110 + 1 CGGAUAUAUGUAUACC---AUAUGUAG-----CGUUUCAACACCAACAGGUUGGGGCACAAGAAUAGUGCCACAAGAGUAACUGGCUUCUGUCUACGAUCUCCCUGAGUCU-UGGCACC ...(((((((.....)---)))))).(-----.((..((((........))))..)).).......((((((((..(((.....)))..)))....((.(((...))))).-.))))). ( -27.50) >DroEre_CAF1 23425 97 + 1 CGGCUAU--AUAUGCGUACAUAUAUGU----ACGUUUCAGCACCAACAGGUUUGGGCACAAUAAUAGUGCCACAAUAGCAAC---------------AUCUCUAUAGGUUU-UGGCACC ..((((.--....(((((((....)))----))))....(((((....)))((((((((.......))))).)))..))...---------------..............-))))... ( -24.40) >DroYak_CAF1 20925 107 + 1 CGGAUAUGCAUAUAUGUACAUAUGUAUCAACAUAUAUCAACACCCACAGUUUUGGGCACAAUAAUAGUGCCACAAAACUAACUGG------------UUCUCUAUGGGCUUGUGGCACC .((...((.((((((((............))))))))))....((((((((((((((((.......))))).)))))))....((------------(((.....))))).))))..)) ( -29.80) >consensus CGGAUAUAUAUAUACG_A_AUAUGUAG_____CGUUUCAACACCAACAGGUUGGGGCACAAGAAUAGUGCCACAAAAGUAACUGG_______CUA_GAUCUCUCUGAGUCU_UGGCACC ......(((((((......))))))).......((((((((........)))))))).........((((((........................................)))))). (-10.83 = -11.68 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:09 2006