Locus 9741

Sequence ID 3R_DroMel_CAF1
Location 25,776,861 – 25,776,960
Length 99
Max. P 0.594499
window15562

overview

Window 2

Location 25,776,861 – 25,776,960
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 84.35
Mean single sequence MFE -22.19
Consensus MFE -16.27
Energy contribution -15.63
Covariance contribution -0.64
Combinations/Pair 1.26
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value 0.12
SVM RNA-class probability 0.594499
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25776861 99 - 27905053
CUCGACGGCCCCUCGAGCAUAUCGGAUAUAGCCGGGCUGAAAAUCCACCCACUAAUUGGGUUUCCAAUCACAAUGGCUCACUGUAUAUCUGCAUUGCCC
.((((.(....)))))(((...((((((((((((((.((......)))))....(((((....)))))......))))......)))))))...))).. ( -25.70)
>DroSec_CAF1 20452 93 - 1
C------GCCCCUCGAACAUAUCGGAUAUAGCCGGGCUGCAAAUCCACCCACUAAUUGGUUUUCCAAUCACAAUGACCCACUGUAUAUCUGCAUUGCCC
.------..........((...((((((((...(((.((......)))))....(((((....)))))...............))))))))...))... ( -15.20)
>DroSim_CAF1 20617 93 - 1
C------GCCCCUCGAACAUAUCGGAUAUAGCCGGGCUGCAAAUCCACCCACAAAUUGGGUUUCCAAUCACAAUGGCCCACUGUAUAUCUGCAUUGCCC
.------((...((((.....))))((((((..(((((........(((((.....))))).............))))).))))))....))....... ( -19.20)
>DroEre_CAF1 21841 97 - 1
CUCGACCAC--CACGAACAUAUCAGAUAUAGCUGGGCUGCAAAUCCGCCCACUAAUUGGGUUUCCAAUCACAGUAGUCCACGGUAUAUCUGCAUUGCCC
.(((.....--..))).((...((((((((.(((((((((......(((((.....)))))...........)))))))).).))))))))...))... ( -26.63)
>DroYak_CAF1 19303 92 - 1
CUCGACCGCCCCUCGAACAUAUCAGAUAUAGCUGGGCUGCAAAUCCGCCCACUAAUUGGGUUUCCCAUCACCAUAGCCCACUGUAUAUCUGU-------
.((((.......))))......((((((((..(((((((.......(((((.....)))))............)))))))...)))))))).------- ( -24.21)
>consensus
CUCGAC_GCCCCUCGAACAUAUCGGAUAUAGCCGGGCUGCAAAUCCACCCACUAAUUGGGUUUCCAAUCACAAUGGCCCACUGUAUAUCUGCAUUGCCC
......................((((((((...((((((.......(((((.....)))))............))))))....))))))))........ (-16.27 = -15.63 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:08 2006