Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,159,420 – 3,159,534 |
Length | 114 |
Max. P | 0.901895 |
Location | 3,159,420 – 3,159,534 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.24 |
Mean single sequence MFE | -36.20 |
Consensus MFE | -31.85 |
Energy contribution | -32.60 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.88 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3159420 114 + 27905053 CACAUCAUGUGUGGCUCCAUCUCCUCCUAUGUGGCUAUCUGCGCAUCAUCA------UCAGCAGCAGAAGCAGAGAAGUCCUGCGAUAUGCUGGCCCACAUGAUGUCCUUCUCGUUGGUC .((((((((((.(((.............(((((.(.....)))))).....------....(((((...((((.(....)))))....))))))))))))))))))((........)).. ( -37.00) >DroSec_CAF1 7291 117 + 1 CACAUCAUGUGUGGCUCCAUCUCCUCCUAUGUGGCAAUCUGCGCAUCAUCAUCAUCAUCAGCAGCA---GCAGAGGAGUCCUGCGAUAUGCUGGCCCACAUGAUGUCCUUCUUGUUGGUC .((((((((((.(((.............(((((........)))))............(((((...---((((.......))))....))))))))))))))))))((........)).. ( -36.30) >DroSim_CAF1 9472 120 + 1 CACAUCAUGUGUGGCUCUAUCUCCUCCUAUUUGGCAAUCUGCGCAUCAUCAUCAUCAUCAGCAGCAGUAGCAGAGGAGUCCUGCGAUAUGAUGGCCCACAUGAUGUCCUUCUUGUUGGUC .((((((((((.((((.((((.((((((.....((...((((((................)).))))..))..)))))....).))))....))))))))))))))((........)).. ( -36.09) >DroYak_CAF1 8836 117 + 1 CACAUCAUGUGUGGCUCCAUCUCCUCCUUUGUGGCAAUCUGCGCAUCAUCAUCAUC---AGCAGCAGCAGAAGAGCAGUCCUGCGAUAUGCUGGCCCACAUGAUGUCCUUCUUGUUGGUC .((((((((((.(((...............(((((.....)).))).........(---((((...((((..........))))....))))))))))))))))))((........)).. ( -35.40) >consensus CACAUCAUGUGUGGCUCCAUCUCCUCCUAUGUGGCAAUCUGCGCAUCAUCAUCAUC_UCAGCAGCAG_AGCAGAGGAGUCCUGCGAUAUGCUGGCCCACAUGAUGUCCUUCUUGUUGGUC .((((((((((.(((...............(((((.....)).)))...............(((((...((((.......))))....))))))))))))))))))((........)).. (-31.85 = -32.60 + 0.75)
Location | 3,159,420 – 3,159,534 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.24 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -34.06 |
Energy contribution | -34.94 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.03 |
Mean z-score | -1.72 |
Structure conservation index | 0.87 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3159420 114 - 27905053 GACCAACGAGAAGGACAUCAUGUGGGCCAGCAUAUCGCAGGACUUCUCUGCUUCUGCUGCUGA------UGAUGAUGCGCAGAUAGCCACAUAGGAGGAGAUGGAGCCACACAUGAUGUG ..((........))((((((((((((((.((.....))....(((((((((((((((.((...------.......))))))).)))......)))))))...).))).)))))))))). ( -41.10) >DroSec_CAF1 7291 117 - 1 GACCAACAAGAAGGACAUCAUGUGGGCCAGCAUAUCGCAGGACUCCUCUGC---UGCUGCUGAUGAUGAUGAUGAUGCGCAGAUUGCCACAUAGGAGGAGAUGGAGCCACACAUGAUGUG ..((........))((((((((((((((.((.....))....(((((((((---..((((..((.((....)).))..))))...))......)))))))...).))).)))))))))). ( -40.10) >DroSim_CAF1 9472 120 - 1 GACCAACAAGAAGGACAUCAUGUGGGCCAUCAUAUCGCAGGACUCCUCUGCUACUGCUGCUGAUGAUGAUGAUGAUGCGCAGAUUGCCAAAUAGGAGGAGAUAGAGCCACACAUGAUGUG ..((........))((((((((((((((......((....))(((((((((..((((.((................))))))...))......)))))))...).))).)))))))))). ( -37.99) >DroYak_CAF1 8836 117 - 1 GACCAACAAGAAGGACAUCAUGUGGGCCAGCAUAUCGCAGGACUGCUCUUCUGCUGCUGCU---GAUGAUGAUGAUGCGCAGAUUGCCACAAAGGAGGAGAUGGAGCCACACAUGAUGUG ..((........))(((((((((((((..((.....))....((((((((((.((((.((.---............))))))...........))))))).))).))).)))))))))). ( -37.02) >consensus GACCAACAAGAAGGACAUCAUGUGGGCCAGCAUAUCGCAGGACUCCUCUGCU_CUGCUGCUGA_GAUGAUGAUGAUGCGCAGAUUGCCACAUAGGAGGAGAUGGAGCCACACAUGAUGUG ..((........))((((((((((((((.((.....))....(((((((((..((((.((................))))))...))......)))))))...).))).)))))))))). (-34.06 = -34.94 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:08 2006