| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,757,005 – 25,757,125 |
| Length | 120 |
| Max. P | 0.582798 |
| Location | 25,757,005 – 25,757,125 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -44.27 |
| Consensus MFE | -41.08 |
| Energy contribution | -41.53 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25757005 120 + 27905053 UAGCUGGGUGCGAGCCGCAUGGUCACAGGUCUGGAAUAUGGUGAUGGGGCCUCGGUUGGAUGGCUUAGUCAGCCUAUUGGACAACAUGACCAUGCGCGUGUGCAAGUCCUGUUCGAACUG .(((.(((((((.((((((((((((...((((..((((.((((((..((((((.....)).))))..)))).))))))))))....)))))))))).)).))))..))).)))....... ( -46.40) >DroSim_CAF1 24517 120 + 1 UAGCUGGGUGCGAGCUGAAUGGUCACAGGUCUGGAAUAUGGUGAUGGGGCCUCGGUUGGAUGGCUUAGUCAGCCUGUUGGACAACGUGACCAUGCGCGUAUGUAAAUCCUGUUCGAAUUG ....((.(((((.((...((((((((..(((..(.....((((((..((((((.....)).))))..)))).))..)..)))...)))))))))).))))).))................ ( -41.00) >DroYak_CAF1 19018 120 + 1 CAGCUGCGUGCGAGCUGCAUGGUCGCAGGUUUGGAAUAUGGUGAUGGGGCCUCGGUUCGAUGGCUUAGUAAGCCUAUUGGACAAAGUGACCAUGCGCGUAUGCAAAUCCUGUUCGAACUG (((.((((((((....((((((((((((((((.(..........).))))))..(((((((((((.....)))).)))))))...)))))))))).))))))))....)))......... ( -45.40) >consensus UAGCUGGGUGCGAGCUGCAUGGUCACAGGUCUGGAAUAUGGUGAUGGGGCCUCGGUUGGAUGGCUUAGUCAGCCUAUUGGACAACGUGACCAUGCGCGUAUGCAAAUCCUGUUCGAACUG .(((.((.((((.(((((((((((((..(((..(.....((((((..((((((.....)).))))..)))).))..)..)))...))))))))))).)).))))...)).)))....... (-41.08 = -41.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:02 2006