Locus 9736

Sequence ID 3R_DroMel_CAF1
Location 25,756,401 – 25,756,510
Length 109
Max. P 0.738056
window15554

overview

Window 4

Location 25,756,401 – 25,756,510
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 93.88
Mean single sequence MFE -41.80
Consensus MFE -38.77
Energy contribution -38.67
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.83
Structure conservation index 0.93
SVM decision value 0.44
SVM RNA-class probability 0.738056
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25756401 109 + 27905053
GUCGCGGCUCGCAUCCGCUGCUGAGGGUCAGAUACUGAUCUGGAGCAGCCUUUAGCAGCGUGAGGAUCUGAGACAACUGAAGGUUGAUGGACAAGCCCAACUCUUCAAG
(((.(((.((.(.((((((((((((((((((((....))))).....))))))))))))).))))).))).)))...(((((((((..((.....)))))).))))).. ( -44.20)
>DroSim_CAF1 23913 109 + 1
GUCGCGGCUCGCAUCCGCUGCUGAGCGUCAGAUACUGAUCUGGAGCAGCCUUCAGCAGCGUGAGGAUCUGAGACAACUGCAGGUUUAUGGAAAGGCCCAACUCUUCAAG
((.(.((((....(((((((((((((..(((((....)))))..)).....))))))))....(((((((((....)).)))))))..)))..))))).))........ ( -37.10)
>DroYak_CAF1 18414 109 + 1
GUCGCGGUUCGCAUCCGCUGCUGAGGGUCAGAUACUGAUCUGGAGCAGCCUUCAGCAGCGUGAGGAUCUGGGACAACUGCAGGUUGAUGGACAAGCCUAACUCUUCCAG
(((.(((.((.(.((((((((((((((((((((....))))).....))))))))))))).))))).))).)))......(((((........)))))........... ( -44.10)
>consensus
GUCGCGGCUCGCAUCCGCUGCUGAGGGUCAGAUACUGAUCUGGAGCAGCCUUCAGCAGCGUGAGGAUCUGAGACAACUGCAGGUUGAUGGACAAGCCCAACUCUUCAAG
(((.(((.((.(.((((((((((((((((((((....))))).....))))))))))))).))))).))).))).......((((........))))............ (-38.77 = -38.67 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:01 2006