Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,753,051 – 25,753,158 |
Length | 107 |
Max. P | 0.582927 |
Location | 25,753,051 – 25,753,158 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.87 |
Mean single sequence MFE | -21.72 |
Consensus MFE | -13.17 |
Energy contribution | -12.84 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.29 |
Mean z-score | -1.40 |
Structure conservation index | 0.61 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25753051 107 + 27905053 UAAAUAAAGCAUAAAUAAUACAAUUAAAAGUUGAGCGCGCUCCCUUCGCAAAGGACAUUCCCACACUUGUAGCCCACUUCCUUCGGGCAGUGC-AACACAAAAGUGCA ........((((........((((.....))))...(((((.((((....)))).................((((.........)))))))))-.........)))). ( -21.70) >DroPse_CAF1 22648 98 + 1 ---------AUUUCAUAAUAAAAUUAAAACUGUUGCGGGCACCAUUCGCAUAACUCAUCCGC-CCCUUCAAGCAGGAUUCCUUUCUGCAGUGGAAACAACAAAGUGCA ---------.....................(((((.((((....................))-)).((((.((((((.....))))))..))))..)))))....... ( -18.15) >DroSec_CAF1 22405 107 + 1 UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUAAGCGCGCUCCAUUCGCACAGGACAUUCCCACACUUGUGGCCCACUUCCUUCGGGCAGUGC-AACAAAAAAGUGCA ........((((.................(((..(.(((.......))).)..)))....((((....))))..((((.((....)).)))).-.........)))). ( -22.50) >DroSim_CAF1 20567 107 + 1 UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUGAGCGCGCUCCCUUCGCACAGGACAUUCCCACACUUGUGGCCCACUUCCUUCGGGCAGUGC-AACAAAAAAGUGCA ........((((........((((.....))))...((((((((.......((((.....((((....))))......))))..))).)))))-.........)))). ( -24.50) >DroEre_CAF1 17969 107 + 1 UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUGGGCGCGCUGCCUUCGCACAGGACAUUCCCACACUUGCAGCCCAUUUCCUUCGGGCAGUGC-AGCAACAAAGUGCA ........((((........((((.....)))).....(((((((..(((..((......)).....))).((((.........)))))).))-)))......)))). ( -25.30) >DroPer_CAF1 22710 98 + 1 ---------AUUUCAUAAUAAAAUUAAAACUGUUGCGGGCACCAUUCGCAUAACUCAUCCGC-CCCUUCAAGCAGGAUUCCUUUCUGCAGUGGAAACAACAAAGUGCA ---------.....................(((((.((((....................))-)).((((.((((((.....))))))..))))..)))))....... ( -18.15) >consensus UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUGAGCGCGCUCCAUUCGCACAGGACAUUCCCACACUUGUAGCCCACUUCCUUCGGGCAGUGC_AACAAAAAAGUGCA ..................................((((.........((((.((......)).........((((.........)))).))))..........)))). (-13.17 = -12.84 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:58 2006