Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,750,198 – 25,750,329 |
Length | 131 |
Max. P | 0.585522 |
Location | 25,750,198 – 25,750,316 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -48.75 |
Consensus MFE | -36.19 |
Energy contribution | -36.25 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.50 |
Structure conservation index | 0.74 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25750198 118 + 27905053 GGUGAUGCGACCCUGAAUGUCCUUGAUGGGCGUCGGGGUCAGCUUCUGGGCGGGAGCGGGCACAGCAGUAGCUGCGGCCACGGCCAAGGCCAGGAAUACGAACAGUUUCAUCUUGGUC (((.....((((((((.(((((.....))))))))))))).((((((....))))))((.(.((((....)))).).))...)))..((((((((..((.....))....)))))))) ( -53.90) >DroPse_CAF1 16494 118 + 1 GGUGAUUCUACCCUGAAUGUCCUUUACAGGUGUAGGGGUCUGCUUCUGCAGGGGAGUGGGGACAGCGCUAGCUGCGGCCACAGCCAAUGCCAGGAAUACGAACAGUUUCAUCUUGAGC (((.......(((.......(((((((....))))))).((((....))))))).((((...((((....))))...)))).)))...(((((((..((.....))....))))).)) ( -37.40) >DroEre_CAF1 15349 118 + 1 GGUGAUGCGACCCUGGAUGUCCUUGAUGGGCGUCGGGGUCAGCUUCUGGGCGGGAGCGGGCACAGCGGUGGCUGCGGCCACGGCCAAGGCCAGGAAUACGAACAGUUUCAUCUUGGUC ..((.((((((((((.((((((.....))))))))))))).((((((....))))))..)))))((.(((((....))))).))...((((((((..((.....))....)))))))) ( -56.10) >DroPer_CAF1 19976 118 + 1 GGUGAUUCUACCCUGAAUGUCCUUGACAGGGACAGGGGUCUGCUUCUGCAGGGGAGUGGUAGCAGCGCUAGCUGCGGCCACAGCCAAUGCCAGGAAUACGAACAGUUUCAUCUUGAGC (((..(((((((((...((((((.....)))))))))))((((....))))))))(((((.(((((....))))).))))).)))...(((((((..((.....))....))))).)) ( -47.60) >consensus GGUGAUGCGACCCUGAAUGUCCUUGACAGGCGUAGGGGUCAGCUUCUGCACGGGAGCGGGCACAGCGCUAGCUGCGGCCACAGCCAAGGCCAGGAAUACGAACAGUUUCAUCUUGAGC (((((..(((((((((....(((....)))..)))))))).((((((....))))))((.(.((((....)))).(((....)))..).)).............)..)))))...... (-36.19 = -36.25 + 0.06)
Location | 25,750,236 – 25,750,329 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.42 |
Mean single sequence MFE | -36.45 |
Consensus MFE | -24.91 |
Energy contribution | -24.35 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.44 |
Structure conservation index | 0.68 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25750236 93 + 27905053 UCAGCUUCUGGGCGGGAGCGGGCACAGCAGUAGCUGCGGCCACGGCCAAGGCCAGGAAUACGAACAGUUUCAUCUUGGUCAAGUCUUGCAACU--------------------------- ...((((((....))))))((((.((((....)))).(((....)))..((((((((..((.....))....))))))))..)))).......--------------------------- ( -32.70) >DroPse_CAF1 16532 120 + 1 UCUGCUUCUGCAGGGGAGUGGGGACAGCGCUAGCUGCGGCCACAGCCAAUGCCAGGAAUACGAACAGUUUCAUCUUGAGCAAGCUGUGAAACUCAUGCCUUUCCUUAAACUUUGCUACGU .........((((((...((((((((((....)))).(((((((((...((((((((..((.....))....))))).))).))))))........)))..))))))..))))))..... ( -38.40) >DroEre_CAF1 15387 93 + 1 UCAGCUUCUGGGCGGGAGCGGGCACAGCGGUGGCUGCGGCCACGGCCAAGGCCAGGAAUACGAACAGUUUCAUCUUGGUCAAGUCUUGAAACU--------------------------- (((((((((....))))))((((...((.(((((....))))).))...((((((((..((.....))....))))))))..)))))))....--------------------------- ( -36.40) >DroPer_CAF1 20014 101 + 1 UCUGCUUCUGCAGGGGAGUGGUAGCAGCGCUAGCUGCGGCCACAGCCAAUGCCAGGAAUACGAACAGUUUCAUCUUGAGCAAGCUGUGAAACUCAUGCCUU------------------- (((((....))))).(((((((.(((((....))))).)))(((((...((((((((..((.....))....))))).))).)))))...)))).......------------------- ( -38.30) >consensus UCAGCUUCUGCACGGGAGCGGGCACAGCGCUAGCUGCGGCCACAGCCAAGGCCAGGAAUACGAACAGUUUCAUCUUGAGCAAGCCGUGAAACU___________________________ ...((((((....))))))((.(.((((....)))).(((....)))..).))............(((((((.(((....)))...)))))))........................... (-24.91 = -24.35 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:58 2006