Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,745,207 – 25,745,306 |
Length | 99 |
Max. P | 0.682608 |
Location | 25,745,207 – 25,745,306 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.42 |
Mean single sequence MFE | -30.65 |
Consensus MFE | -24.79 |
Energy contribution | -25.18 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.22 |
Mean z-score | -1.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25745207 99 - 27905053 UCU---UACUCUUUUC---CCC---U-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUUAUCCUGGCCGCCCAC ...---..........---...---.-.....(((.(.((..(((((((((((((........)))))))......(((.....)))))).....)))..))))))... ( -32.80) >DroSec_CAF1 10371 99 - 1 UCU---UACUCUUUUC---CCC---U-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCUCUUAUCCUGGCUGCCCAC ...---..........---...---.-.....(((((.(.(((((((((((((((........)))))))......(((.....))))))))))).)....)))))... ( -34.90) >DroSim_CAF1 10282 99 - 1 UCU---UACUCUUUUC---CCC---U-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUUAUCCUGGCUGCCCAC ...---..........---...---.-.....((((..((..(((((((((((((........)))))))......(((.....)))))).....)))..))))))... ( -33.50) >DroWil_CAF1 22023 106 - 1 UCU---UUUUCAUUUGAUUCAGUACUGAUUUUAAUAGAGCUGGGAGGCAGUUGACCGCUCCAAGUCAACCUUCACCAUGGACAUUACCCCGCUAAUUCUGGCUGCACAU ...---.....(((.((.(((....))).)).)))..(((..((((((.((((((........)))))).........((........)))))..)))..)))...... ( -20.30) >DroYak_CAF1 10551 102 - 1 UCU---UAUUCAUUUA---CCCUACU-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUGAUCCUGGCCGCCCAC ...---..........---.......-.....(((.(.((..(((((((((((((........)))))))......(((.....)))))).....)))..))))))... ( -32.80) >DroAna_CAF1 11365 99 - 1 CCUGUGUAAUGAGAUC---C-------UUUUCGGCAGAGCUGGGAGGCAGUGGACCGUUCGAAGUCGACCUUCACCGUGGACAUCACGCCCCUUAUCCUAGCGGCCCAU ..........((((..---.-------.))))(((...((((((((((.(((((..(.(((....))).)))))).(((.....)))))).....))))))).)))... ( -29.60) >consensus UCU___UACUCAUUUC___CCC___U_CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUUAUCCUGGCUGCCCAC ................................(((...(((((((((((((((((........)))))))......(((.....)))))).....))))))).)))... (-24.79 = -25.18 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:50 2006