Locus 9729

Sequence ID 3R_DroMel_CAF1
Location 25,744,039 – 25,744,141
Length 102
Max. P 0.812754
window15541

overview

Window 1

Location 25,744,039 – 25,744,141
Length 102
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -29.48
Consensus MFE -20.52
Energy contribution -20.88
Covariance contribution 0.36
Combinations/Pair 1.25
Mean z-score -1.56
Structure conservation index 0.70
SVM decision value 0.65
SVM RNA-class probability 0.812754
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25744039 102 + 27905053
GCCGGAAGCCCGGCAGUCCGUCGUACCAAAUGGCGGCCAACAAUUGUUGGACAUUUGGAUGUGCCACAAACUAGAAGGGGGAGUAA-UGUUUAUAAAUUCAAG
(((((....)))))(.(((.((...(((((((....(((((....))))).))))))).((.....))........)).))).)..-................ ( -31.00)
>DroGri_CAF1 23147 97 + 1
GCCGGAAACCGGGUAAGCCCUCAUACCAAAUGGCAGCCAGCAAUUGUUGCACAUUCGGAUGUGCCACAAACUAGGA-GC-AAUAAUUAA---CUGAA-UUAAG
((((....).(((....)))...........)))...(((.(((((((((((((....)))).((........)).-))-)))))))..---)))..-..... ( -23.90)
>DroSec_CAF1 9196 102 + 1
GCCGGAAUCCCGGCAGACCGUCGUACCAAAUCGCGGCCAACAAUUGUUGGACGUUUGGAUGUGCCACAAACUAGGAGGGGGAGUAC-AAUUUUUAAAUUCAAG
(((((....)))))...........((((...(((.(((((....))))).))))))).(((((..(...((....)).)..))))-)............... ( -28.50)
>DroSim_CAF1 9131 101 + 1
GCCGGAAUCCCGGCAGUCCGUCGUACCAAAUGGCGGCCAACAAUUGUUGGACGUUUGGAUGUGCCACAAACUAGGAGG-GAAGUAC-AAUUUUUAAAUUCAAG
(((((....)))))..(((.((.(((((((((....(((((....))))).))))))).((.....))...)).)).)-)).....-................ ( -31.60)
>DroEre_CAF1 9205 102 + 1
GCCGGAAUCCCGGCAGUCCGUCGUACCAAAUGGCGGCCAACAACUGUUGGACAUUUGGAUGUGCCACAAACUAGGAGGG-GAAUACAAAUAUAUACAUCUAGG
(((((....)))))...(((((((.....)))))))(((((....)))))....(((((((((((........))..(.-.....).......))))))))). ( -31.80)
>DroMoj_CAF1 17404 98 + 1
GCCGAAAGCCAGGCAAACCCUCAUACCAAAUGGCAGCGAGCAAUUGCUGAACGUUUGGAUGUGCCACAAACUGGAAUGG-GAUCAGCAA---AUGGA-AUACA
(((........)))...(((.(((((((((((.((((((....))))))..))))))).))))(((.....)))...))-)........---.....-..... ( -30.10)
>consensus
GCCGGAAUCCCGGCAGUCCGUCGUACCAAAUGGCGGCCAACAAUUGUUGGACAUUUGGAUGUGCCACAAACUAGGAGGG_GAGUAC_AAUUUAUAAAUUCAAG
(((((....))))).......(((.(((((((....(((((....))))).)))))))))).......................................... (-20.52 = -20.88 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:49 2006