Locus 9728

Sequence ID 3R_DroMel_CAF1
Location 25,742,326 – 25,742,418
Length 92
Max. P 0.731766
window15540

overview

Window 0

Location 25,742,326 – 25,742,418
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.05
Mean single sequence MFE -21.63
Consensus MFE -15.32
Energy contribution -15.93
Covariance contribution 0.61
Combinations/Pair 1.14
Mean z-score -2.21
Structure conservation index 0.71
SVM decision value 0.43
SVM RNA-class probability 0.731766
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25742326 92 - 27905053
-CUAAUACAUCCUU-UCUGUGUCCUUCCACCCUCUAAU-GCUCCC-UGUU---CCAACUCCCAGCGAAAGUCCAUGGAACGGGCACAGACGCUGCAUGA
-......(((.(..-((((((((((((((....((..(-(((...-.((.---...))....))))..))....))))).)))))))))....).))). ( -24.40)
>DroVir_CAF1 17377 95 - 1
-UUAGCACUUAUGUUACUGACUCCCUCCCUCCCAUCUCUCAUCCCACAUC---CCAUCACCUAGCGAAAGUCCAUGGAGAAGGCGCAGACGCUGCAUGA
-.(((((....)))))......................((((........---((.((.((..((....))....)).)).)).((((...)))))))) ( -12.90)
>DroSec_CAF1 7468 92 - 1
-CUAAUAUAUCCUU-UCUGUGUCCUUCCACCCCUUAAU-GCUCUC-UGUU---CCAACUCCCAGCGAAAGUCCAUGGAACGGGCACAGACGCUGCAUGA
-.............-((((((((((((((...(((..(-(((...-.((.---...))....)))).)))....))))).))))))))).......... ( -22.60)
>DroSim_CAF1 7406 92 - 1
-CUAAUACAUCCUU-UCUGUGUCCUUCCACCCCUUAAU-GCUCCC-UGUU---CCAACUCCCAGCGAAAGUCCAUGGAACGGGCACAGACGCUGCAUGA
-......(((.(..-((((((((((((((...(((..(-(((...-.((.---...))....)))).)))....))))).)))))))))....).))). ( -23.10)
>DroEre_CAF1 7511 92 - 1
-CUAAUACAUCCUUUUCUGUGUCCUUCCACCC-UCAAU-GCUCCC-UCCU---CCAACUCGCAGCGAAAGUCCAUGGAACGGGCACAGACGCUGCAUGA
-......(((.(...((((((((((((((...-....(-((....-....---.......)))((....))...))))).)))))))))....).))). ( -24.46)
>DroYak_CAF1 7713 97 - 1
CCUAAUACAUCCUUCUCUGUGUCCUUCCACCCCCCAAU-GCUUCC-UUUUUAACCAACUCCCAGCGAAAGUCCAUGGAACGGGCACAGACGCUGCAUGA
.......(((.(..(((((((((((((((........(-(((...-................))))........))))).))))))))).)..).))). ( -22.30)
>consensus
_CUAAUACAUCCUU_UCUGUGUCCUUCCACCCCUUAAU_GCUCCC_UGUU___CCAACUCCCAGCGAAAGUCCAUGGAACGGGCACAGACGCUGCAUGA
.......(((.(...((((((((((((((.(........).......................((....))...))))).)))))))))....).))). (-15.32 = -15.93 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:48 2006