| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,740,313 – 25,740,418 |
| Length | 105 |
| Max. P | 0.884900 |
| Location | 25,740,313 – 25,740,418 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.24 |
| Mean single sequence MFE | -44.30 |
| Consensus MFE | -30.83 |
| Energy contribution | -30.78 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25740313 105 - 27905053 ------CUCUGAAGCCGGCGAUCAAGGUGGGUCAGAGCAGUGCCGCAGCUGGCGGAGAACGAGGCAAAUCCACGGUCACAGGACGCAUGAUCUCCGGCUGGCUCUAAGC-------CG-- ------......((((((.(((((..((((((....((.((.((((.....))))...))...))..)))))).(((....)))...))))).))))))(((.....))-------).-- ( -42.90) >DroVir_CAF1 15572 114 - 1 ------CACUCAAGCCAGCCAUGAAGGUGGGCCAAAGUAGCGCCGCGGCGGGCGGCGAACGCGGCAAAUCCACCGUCACAGGCCGCAUGAUCUCCGGUUGGCUGUAGAAGCAAAGCCAAA ------..((..((((((((..((..(((((((...((..((((((.....)))))).))((((........))))....)))).)))..))...))))))))..))............. ( -43.80) >DroGri_CAF1 19536 107 - 1 ------CAGUCAAGCCAGUCAACAAGGUGGGUCAAAGCAGCGCCGCGGCGGGUGGCGAUCGCGGCAAAUCGACCGUCACUGGCCGCAUGAUCUCUGGCUGGCUGUA-------AUCCAAA ------((((((.((((((((....((((.((....))..))))(((((.(((((((.(((........))).))))))).))))).)))...)))))))))))..-------....... ( -49.20) >DroWil_CAF1 17596 118 - 1 CUGCACCGCUCAAACCUGCCAUUAAGGUGGGUCAAAGCAGUGCUGCAGCUGGCGGCGAACGUGGCAAAUCGACUGUUACAGGUCGCAUGAUCUCCGGUUGGCUAUAGAG--AAGACCAAA ..((((.(((...(((..((.....))..)))...))).))))...(((..((((.((.((((......(((((......))))))))).)).)).))..)))......--......... ( -39.90) >DroMoj_CAF1 14053 112 - 1 ------CACUCAAGCCGGCGAUUAAAGUGGGUCAAAGCAGCGCCGCAGCCGGCGGUGAGCGCGGCAAGUCCACCGUCACAGGCCGCAUGAUCUCCGGCUGGUUGUAAGA--GAAGCCACA ------......((((((.(((((............((..((((((.....)))))).))(((((..((........))..))))).))))).))))))((((......--..))))... ( -43.60) >DroPer_CAF1 5516 105 - 1 ------CCCUGAAGCCGGCCAUCAAGGUGGGUCAGAGCAGUGCCGCGGCUGGCGGCGAGCGGGGCAAGUCUACGGUCACGGGCCGCAUGAUUUCCGGCUGGCUGUAGGU-------AA-- ------.((((.((((((((................((..((((((.....)))))).))..((.(((((..((((.....))))...))))))))))))))).)))).-------..-- ( -46.40) >consensus ______CACUCAAGCCGGCCAUCAAGGUGGGUCAAAGCAGCGCCGCAGCUGGCGGCGAACGCGGCAAAUCCACCGUCACAGGCCGCAUGAUCUCCGGCUGGCUGUAGGA____A_CCAAA ............((((((((.....((.((((((......((((((.....))))))...(((((....(....)......))))).))))))))))))))))................. (-30.83 = -30.78 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:47 2006