Locus 9726

Sequence ID 3R_DroMel_CAF1
Location 25,735,568 – 25,735,659
Length 91
Max. P 0.774104
window15538

overview

Window 8

Location 25,735,568 – 25,735,659
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 67.59
Mean single sequence MFE -28.67
Consensus MFE -11.22
Energy contribution -12.44
Covariance contribution 1.23
Combinations/Pair 1.31
Mean z-score -1.82
Structure conservation index 0.39
SVM decision value 0.54
SVM RNA-class probability 0.774104
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25735568 91 - 27905053
CCCCCAAUGGGAGCUGCUCCUCGG--ACUGCUCCUGC------UCCUGCUCCUCCUGCGAGUGGCU---GGCCCACUCGGUGUCUUCGCCCAGUCGCCUCAC
.(((....)))(((..(((...((--(..((....))------))).((.......)))))..)))---(((..(((.((((....)))).))).))).... ( -30.50)
>DroVir_CAF1 8980 79 - 1
--------UGGAGCUGCUCAGCGGCGACU-CACUU-----------GA---CUCUGCUGAGUCAGCGACUGCCCAUUCGGGCUCCGCACCCGCCGCCCACAC
--------..(((...))).((((((...-....(-----------((---(((....))))))(((...((((....))))..)))...))))))...... ( -33.30)
>DroSim_CAF1 697 85 - 1
CCCCCAUUGGGAGCUGCUCCUCGG--ACUGCUCC------------UGCUCCUCCUGCGAGUGGCU---GGCCCACUCGGUGUCUUCGCCCAGUCGCCUCAC
.(((....)))(((..(((...((--(..((...------------.))...)))...)))..)))---(((..(((.((((....)))).))).))).... ( -30.30)
>DroEre_CAF1 684 85 - 1
CCCCCAUUGGGAGCUGCUCCUCGG--ACUGCUCC------------UGCUCCUCCUGCGAGUGGCU---GGCCCACUCGGUGUCCUCUCCCAGUCGCCUCAC
.....((((((((..((.((..((--(..((...------------.))...)))...((((((..---...)))))))).))...))))))))........ ( -29.00)
>DroYak_CAF1 685 97 - 1
CCCCCAUUGGGAGCUCCUCCUCGG--ACUGCUCCUGCUCCUGCUCCUGCUCCUCCUGCGAGUGGCU---GGCCCACUCGGUGUCCUCACCCAGUCGCCUUAC
........(((((((((.....))--)..))))))((..(((.....((.......))((((((..---...))))))((((....)))))))..))..... ( -30.80)
>DroAna_CAF1 690 88 - 1
CCCCAAUGGGUAAACUUUCAUCGG--AAACGUCCGGU------UCCUGUUCCUC---GGAAUUACU---AGACCAUUCAGUAUCCUCACCCAGCCUCCUCAC
......(((((.(((....(((((--(....))))))------....)))....---(((..((((---.((....)))))))))..))))).......... ( -18.10)
>consensus
CCCCCAUUGGGAGCUGCUCCUCGG__ACUGCUCCU___________UGCUCCUCCUGCGAGUGGCU___GGCCCACUCGGUGUCCUCACCCAGUCGCCUCAC
.........(((((...............)))))........................((((((........))))))((((.(........).)))).... (-11.22 = -12.44 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:46 2006