| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,728,284 – 25,728,389 |
| Length | 105 |
| Max. P | 0.524717 |
| Location | 25,728,284 – 25,728,389 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.49 |
| Mean single sequence MFE | -44.87 |
| Consensus MFE | -29.14 |
| Energy contribution | -28.42 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25728284 105 - 27905053 AUGA---GGC------------GGGCACAUCGCUCACGAUCGCCUUGCACAUGACCAUCCUGACUCCGGCGAGGAAGUCCGAGAGGUAACAUCAUGUGGGUCGUGACGGAGCCGGCGGUU ....---.((------------.(((...(((.((((((((......(((((((....(((..(((.(((......))).)))))).....)))))))))))))))))).))).)).... ( -38.20) >DroPse_CAF1 24996 108 - 1 AUGACGACUG------------CGGCCCGUUGUUCACAAUCGCCUUGCACAUGACCAUCCUGACUCCGGCGAGGAAGUCUGUGAGGUAACAUCAUGUGGGUCGUGAUGGCGCAGUCGGUU ....((((((------------((((..((((....)))).)))..((.....(((.(((.((((((.....)).)))).).)))))..(((((((.....))))))))))))))))... ( -40.90) >DroGri_CAF1 61121 108 - 1 GCGGCGGCGG------------CGGCACUUCGCUCACAAUCGCCUUGCACAUGACCAUCCUGACUCCGGCGAGGAAGUCGGUUAGGUAACAUCAUGUGGGUCGUGGCGGAGCCGCCGCCU ..((((((((------------((((.....))).....(((((.(.(((((((....(((((..(((((......)))))))))).....))))))).)....))))).))))))))). ( -54.60) >DroWil_CAF1 61617 117 - 1 AUGAU--GGC-GACCCCAGAAGCGGCACAUCACUCACAAUCGCCUUGCACAUGACCAUCUUGACUCCGGCAAGGAAGUCAGUUAGGUAACAUCAUGUGGGUCGUGGUGGUGCCGCCGCUU ....(--((.-....))).(((((((.((((((.(((....(((...(((((((((...((((((((.....)).))))))...)).....)))))))))).)))))))))..))))))) ( -42.50) >DroYak_CAF1 24428 117 - 1 AUGA---GGCGGAGGCGGAGACGGGCACAUCGCUCACGAUCGCCUUGCACAUGACCAUCCUGACUCCGGCGAGGAAGUCCGAGAGGUAACAUCAUGUGGGUCGUGACGGAGCCGGCGGUU ..((---(((((...(((((.(((.....)))))).)).)))))))((.(((((((.......(((((((......).))).)))....(((...)))))))))).((....)))).... ( -39.50) >DroMoj_CAF1 57076 106 - 1 --GGUGGGGG------------CGGCACAUCGCUCACAAUCGCCUUGCACAUGACCAUCCUGACUCCGGCUAGGAAGUCGGUUAGGUAACAUCAUGUGGGCCGUGGCGGUGCCGCCGCCU --...((.((------------((((((..(((.(((....(((...(((((((....(((((..((((((....))))))))))).....)))))))))).)))))))))))))).)). ( -53.50) >consensus AUGA___GGC____________CGGCACAUCGCUCACAAUCGCCUUGCACAUGACCAUCCUGACUCCGGCGAGGAAGUCCGUGAGGUAACAUCAUGUGGGUCGUGACGGAGCCGCCGCUU .......................(((.(((((.((((....(((...(((((((....(((((((((.....)).))))....))).....)))))))))).)))))))))..))).... (-29.14 = -28.42 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:40 2006