Locus 9721

Sequence ID 3R_DroMel_CAF1
Location 25,726,982 – 25,727,086
Length 104
Max. P 0.688796
window15530

overview

Window 0

Location 25,726,982 – 25,727,086
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.64
Mean single sequence MFE -28.10
Consensus MFE -18.43
Energy contribution -18.85
Covariance contribution 0.42
Combinations/Pair 1.22
Mean z-score -1.65
Structure conservation index 0.66
SVM decision value 0.32
SVM RNA-class probability 0.688796
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25726982 104 + 27905053
CUAAUUCACAUUCGACCCGAGGCGACGCCCCCGCCAAAAAUGUGGCGAAAAGCCGAAAGGUUUUGUACAGCU----------------GGCAUUAAUCCGGCAAAAACUGGCACACACAC
...........(((.((...))))).(((..(((((......))))).((((((....)))))).....(((----------------((.......))))).......)))........ ( -29.20)
>DroSec_CAF1 22307 100 + 1
CUAAUUCACAUUCGACCCGAGGCGACGCCCACGCCAAAAAUGUGGCGAAAAGCCGAAAGGUUUUGUACAGCC----------------GGCAUUAAUCCGGCAAAAACUGGCAC----AC
...........(((.((...))))).(((..(((((......))))).((((((....)))))).....(((----------------((.......))))).......)))..----.. ( -31.60)
>DroSim_CAF1 22525 100 + 1
CUAAUUCACAUUCGACCCGAGGCGACGCCCACGCCAAAAAUGUGGCGAAAAGCCGAAAGGUUUUGUACAGCC----------------GGCAUUAAUCCGGCAAAAACUGGCAC----AC
...........(((.((...))))).(((..(((((......))))).((((((....)))))).....(((----------------((.......))))).......)))..----.. ( -31.60)
>DroEre_CAF1 23470 98 + 1
CUAAUUCACAUUCGACCCGAGGCGACGCCCCCGCCAAAA--GUGGCGAAAAGCCGAAAGGUUUUGUGCAGCC----------------GGCAUUAAUCUGGCAAAAACUGGCAC----AC
...........(((.((...))))).(((..(((((...--.))))).((((((....)))))).....(((----------------((.......))))).......)))..----.. ( -29.00)
>DroYak_CAF1 23182 98 + 1
CUAAUUCACAUUCGACCCGAGGCGACGCCCCCGCCAAAA--GUGGCGAAAAGCCGAAAGGUUUUGCACAGCC----------------GGCAUUAAUCUGGCAAAAACUGGCAC----AC
...........(((.((...))))).(((..(((((...--.))))).((((((....)))))).....(((----------------((.......))))).......)))..----.. ( -29.00)
>DroAna_CAF1 23552 108 + 1
CUAAUUCGAAUUCAACCCAAGGCAACACCUACGCCGAA--UGCAGCGAAA------AAGGUUUUGUUUAAGCUACUUCAGUCAUUUCAGCCAUUUAUUUACGCGUAUGUGGCAC----AC
.......(((.........((((((.((((.(((....--....)))...------.)))).))))))..(((.....)))...))).(((((.(((......))).)))))..----.. ( -18.20)
>consensus
CUAAUUCACAUUCGACCCGAGGCGACGCCCACGCCAAAA_UGUGGCGAAAAGCCGAAAGGUUUUGUACAGCC________________GGCAUUAAUCCGGCAAAAACUGGCAC____AC
...........(((.((...))))).(((..(((((......))))).((((((....))))))........................)))......((((......))))......... (-18.43 = -18.85 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:39 2006